| Literature DB >> 27281340 |
Vinícius Silva Junqueira1, Leonardo de Azevedo Peixoto2, Bruno Galvêas Laviola3, Leonardo Lopes Bhering2, Simone Mendonça3, Tania da Silveira Agostini Costa4, Rosemar Antoniassi5.
Abstract
The biggest challenge for jatropha breeding is to identify superior genotypes that present high seed yield and seed oil content with reduced toxicity levels. Therefore, the objective of this study was to estimate genetic parameters for three important traits (weight of 100 seed, oil seed content, and phorbol ester concentration), and to select superior genotypes to be used as progenitors in jatropha breeding. Additionally, the genotypic values and the genetic parameters estimated under the Bayesian multi-trait approach were used to evaluate different selection indices scenarios of 179 half-sib families. Three different scenarios and economic weights were considered. It was possible to simultaneously reduce toxicity and increase seed oil content and weight of 100 seed by using index selection based on genotypic value estimated by the Bayesian multi-trait approach. Indeed, we identified two families that present these characteristics by evaluating genetic diversity using the Ward clustering method, which suggested nine homogenous clusters. Future researches must integrate the Bayesian multi-trait methods with realized relationship matrix, aiming to build accurate selection indices models.Entities:
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Year: 2016 PMID: 27281340 PMCID: PMC4900661 DOI: 10.1371/journal.pone.0157038
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Phenotypic trait evaluation using the Boxplot analysis.
Vertical bars are second and third quantiles, and the dots outside the bars are outliers. Each block was evaluated separately, allowing their individual evaluation. W100S –weight of 100 seeds; SOC–seed oil content; PEC–phorbol ester concentration.
Variance components and genetic parameters estimated under the Bayesian multi-trait analysis via Gibbs sampling of weight of 100 seeds (W100S), seed oil content (SOC) and phorbol ester concentration (PEC) traits.
| Parameter | PM | PMD | PMO | PSD | HPD | Z | ESS |
|---|---|---|---|---|---|---|---|
| 15.522 | 15.390 | 14.708 | 2.061 | 11.73, 19.65 | 0.19 | 5200 | |
| 0.891 | 0.884 | 0.823 | 0.408 | 0.10, 1.69 | -0.07 | 4187 | |
| -0.319 | -0.318 | -0.305 | 0.247 | -0.80, 0.17 | 0.13 | 5706 | |
| 0.359 | 0.337 | 0.299 | 0.132 | 0.15, 0.63 | 0.15 | 1991 | |
| -0.004 | -0.003 | 0.003 | 0.067 | -0.13, 0.13 | 0.18 | 3175 | |
| 0.373 | 0.369 | 0.386 | 0.059 | 0.26, 0.49 | 0.03 | 6000 | |
| 7.498 | 7.446 | 7.430 | 0.799 | 5.95, 9.02 | -0.04 | 6000 | |
| 0.008 | 0.004 | 0.113 | 0.317 | -0.62, 0.63 | -0.07 | 5426 | |
| -0.080 | -0.079 | -0.063 | 0.116 | -0.32, 0.13 | -0.21 | 5203 | |
| 2.416 | 2.409 | 2.452 | 0.214 | 1.98, 2.82 | -0.11 | 4190 | |
| 0.016 | 0.015 | 0.020 | 0.016 | -0.11, 0.14 | -0.02 | 4790 | |
| 0.312 | 0.310 | 0.305 | 0.033 | 0.25, 0.37 | -0.08 | 5995 | |
| 0.672 | 0. 674 | 0.684 | 0.040 | 0.586, 0.745 | 0.131 | 6000 | |
| 0.129 | 0.122 | 0.105 | 0.045 | 0.059, 0.232 | 0.679 | 2055 | |
| 0.545 | 0.544 | 0.551 | 0.052 | 0.436, 0.640 | -1.573 | 6000 |
1 Genetic variance of i trait (); genetic covariance between traits i and j (); residual variance of i trait (); residual covariance between traits i and j (); and heritability of i trait ().
2 Posterior mean (PM), posterior median (PMD), posterior mode (PMO), posterior standard deviation (PSD), posterior high density interval (HPD), Z-Geweke (Z) and effective sample size (ESS).
Heritability (diagonal), genotypic (above) and phenotypic (below) correlation between traits.
| Trait | SOC | W100S | PEC |
|---|---|---|---|
| Seed oil content ( | 0.129 | 0.544 | -0.010 |
| Weight of 100 seeds ( | 0.113 | 0.674 | -0.130 |
| Phorbol ester concentration ( | 0.009 | -0.101 | 0.545 |
| Phenotypic variance | 2.774 | 23.019 | 0.685 |
Fig 2Ward cluster method based on the Mahalanobis distance, calculated using genotypic values estimated by the Bayesian multi-trait analysis.
Fig 3Genotypic values (above diagonal) and phenotypic values (below diagonal) distributions between seed oil content (SOC, g), weight of 100 seed (W100S, %) and phorbol ester concentration (PEC, mg/g).
Scenarios with the respective traits considered by the selection criteria.
| Scenario | Traits considered in the selection index |
|---|---|
| 1 | SOC |
| 2 | SOC + W100S |
| 3 | SOC + W100S + PEC |
1 Weight of 100 seeds (W100S, g), Seed oil content (SOC, %), and phorbol ester concentration (PEC) in seeds (mg/g)
Response to selection per generation (S), accuracy of the index (RIH), and monetary overall genetic gain per generation (ΔG) for weight of 100 seeds (W100S, g), seed oil content (SOC, %) and phorbol ester concentration in seeds (PEC, mg/g) using selection index.
| S for each trait | |||||
|---|---|---|---|---|---|
| Scenario | RIH | Δ | SOC | W100S | PEC |
| w1 | |||||
| 1 | 0.2641 | 0.8647 | 0.37806 | 0.94490 | -0.00377 |
| 2 | 0.5866 | 1.9206 | 0.42677 | 5.43193 | -0.10412 |
| 3 | 0.7064 | 2.3128 | 0.36474 | 4.45593 | 0.34990 |
| w2 | |||||
| 1 | 0.3172 | 1.4959 | 0.37806 | 0.94490 | -0.00377 |
| 2 | 0.5631 | 2.6559 | 0.45034 | 5.16525 | -0.09691 |
| 3 | 0.6288 | 2.9657 | 0.41157 | 4.58196 | 0.26170 |
| w3 | |||||
| 1 | 0.3319 | 2.9980 | 0.37806 | 0.94490 | -0.00377 |
| 2 | 0.6058 | 5.4716 | 0.44750 | 5.20812 | -0.09802 |
| 3 | 0.6241 | 5,6372 | 0.43881 | 5.03137 | 0.09332 |
1 In scenario 1 only SOC was used as selection criteria. W100S was incorporated into the selection index in scenario 2, and PEC was added to scenario 3. Economic relative weights (w) were defined as w1 = same, w2 = double for SOC, and w3 = 4(SOC), 2(W100S) and 1(PEC).