Literature DB >> 33661099

Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors.

Zied Gaieb1, Kaelin D Fleming2, Manoj K Rathinaswamy2, Chiara Borsari3, Noah J Harris2, Brandon E Moeller2, Matthias P Wymann3, Rommie E Amaro1, John E Burke2,4.   

Abstract

Class I Phosphoinositide 3-kinases (PI3Ks) are master regulators of cellular functions, with the class IB PI3K catalytic subunit (p110γ) playing key roles in immune signalling. p110γ is a key factor in inflammatory diseases and has been identified as a therapeutic target for cancers due to its immunomodulatory role. Using a combined biochemical/biophysical approach, we have revealed insight into regulation of kinase activity, specifically defining how immunodeficiency and oncogenic mutations of R1021 in the C-terminus can inactivate or activate enzyme activity. Screening of inhibitors using HDX-MS revealed that activation loop-binding inhibitors induce allosteric conformational changes that mimic those in the R1021C mutant. Structural analysis of advanced PI3K inhibitors in clinical development revealed novel binding pockets that can be exploited for further therapeutic development. Overall, this work provides unique insights into regulatory mechanisms that control PI3Kγ kinase activity and shows a framework for the design of PI3K isoform and mutant selective inhibitors.
© 2021, Rathinaswamy et al.

Entities:  

Keywords:  HDX-MS; PI3K; PIK3CG; biochemistry; chemical biology; human; hydrogen exchange; kinases; molecular biophysics; molecular dynamics; structural biology

Mesh:

Substances:

Year:  2021        PMID: 33661099      PMCID: PMC7955810          DOI: 10.7554/eLife.64691

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  102 in total

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Journal:  Clin Cancer Res       Date:  2010-09-28       Impact factor: 12.531

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Journal:  Bioorg Med Chem Lett       Date:  2012-07-17       Impact factor: 2.823

3.  Phosphoinositide 3-kinase gamma is an essential amplifier of mast cell function.

Authors:  Muriel Laffargue; Ronan Calvez; Peter Finan; Alexandre Trifilieff; Maryse Barbier; Fiorella Altruda; Emilio Hirsch; Matthias P Wymann
Journal:  Immunity       Date:  2002-03       Impact factor: 31.745

4.  PI3Kgamma inhibition blocks glomerulonephritis and extends lifespan in a mouse model of systemic lupus.

Authors:  Domingo F Barber; Almira Bartolomé; Carmen Hernandez; Juana M Flores; Clara Redondo; Cristina Fernandez-Arias; Montserrat Camps; Thomas Rückle; Matthias K Schwarz; Santiago Rodríguez; Carlos Martinez-A; Dimitrios Balomenos; Christian Rommel; Ana C Carrera
Journal:  Nat Med       Date:  2005-08-28       Impact factor: 53.440

5.  Identification of allosteric binding sites for PI3Kα oncogenic mutant specific inhibitor design.

Authors:  Michelle S Miller; Sweta Maheshwari; Fiona M McRobb; Kenneth W Kinzler; L Mario Amzel; Bert Vogelstein; Sandra B Gabelli
Journal:  Bioorg Med Chem       Date:  2017-01-16       Impact factor: 3.641

6.  Ras is an indispensable coregulator of the class IB phosphoinositide 3-kinase p87/p110gamma.

Authors:  Barbara Kurig; Aliaksei Shymanets; Thomas Bohnacker; Carsten Brock; Mohammad Reza Ahmadian; Michael Schaefer; Antje Gohla; Christian Harteneck; Matthias P Wymann; Elisabeth Jeanclos; Bernd Nürnberg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-11       Impact factor: 11.205

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  PI3Kγ is a molecular switch that controls immune suppression.

Authors:  Megan M Kaneda; Karen S Messer; Natacha Ralainirina; Hongying Li; Christopher J Leem; Sara Gorjestani; Gyunghwi Woo; Abraham V Nguyen; Camila C Figueiredo; Philippe Foubert; Michael C Schmid; Melissa Pink; David G Winkler; Matthew Rausch; Vito J Palombella; Jeffery Kutok; Karen McGovern; Kelly A Frazer; Xuefeng Wu; Michael Karin; Roman Sasik; Ezra E W Cohen; Judith A Varner
Journal:  Nature       Date:  2016-09-19       Impact factor: 49.962

9.  Inhalation of the prodrug PI3K inhibitor CL27c improves lung function in asthma and fibrosis.

Authors:  Carlo C Campa; Rangel L Silva; Jean P Margaria; Tracey Pirali; Matheus S Mattos; Lucas R Kraemer; Diego C Reis; Giorgio Grosa; Francesca Copperi; Eduardo M Dalmarco; Roberto C P Lima-Júnior; Silvio Aprile; Valentina Sala; Federica Dal Bello; Douglas Silva Prado; Jose Carlos Alves-Filho; Claudio Medana; Geovanni D Cassali; Gian Cesare Tron; Mauro M Teixeira; Elisa Ciraolo; Remo C Russo; Emilio Hirsch
Journal:  Nat Commun       Date:  2018-12-12       Impact factor: 14.919

10.  Human PI3Kγ deficiency and its microbiota-dependent mouse model reveal immunodeficiency and tissue immunopathology.

Authors:  Andrew J Takeda; Timothy J Maher; Yu Zhang; Stephen M Lanahan; Molly L Bucklin; Susan R Compton; Paul M Tyler; William A Comrie; Makoto Matsuda; Kenneth N Olivier; Stefania Pittaluga; Joshua J McElwee; Debra A Long Priel; Douglas B Kuhns; Roger L Williams; Peter J Mustillo; Matthias P Wymann; V Koneti Rao; Carrie L Lucas
Journal:  Nat Commun       Date:  2019-09-25       Impact factor: 14.919

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  3 in total

1.  Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors.

Authors:  Zied Gaieb; Kaelin D Fleming; Manoj K Rathinaswamy; Chiara Borsari; Noah J Harris; Brandon E Moeller; Matthias P Wymann; Rommie E Amaro; John E Burke
Journal:  Elife       Date:  2021-03-04       Impact factor: 8.140

Review 2.  The role of PI3Kγ in the immune system: new insights and translational implications.

Authors:  Stephen M Lanahan; Matthias P Wymann; Carrie L Lucas
Journal:  Nat Rev Immunol       Date:  2022-03-23       Impact factor: 53.106

3.  Development of New Thiophene-Containing Triaryl Pyrazoline Derivatives as PI3Kγ Inhibitors.

Authors:  Bing Yang; Bo Zhang; Qun Zhao; Jin Li; Yujun Shi
Journal:  Molecules       Date:  2022-04-08       Impact factor: 4.927

  3 in total

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