Literature DB >> 33661048

A low-cost computational approach to analyze spiking activity in cockroach sensory neurons.

David J Torres1, Andres Romero2, Wes Colgan2, Ulises M Ricoy2,3.   

Abstract

Undergraduates use a spike sorting routine developed in Octave to analyze the spiking activity generated from mechanical stimulation of spines of cockroach legs with the inexpensive SpikerBox amplifier and the free software Audacity. Students learn the procedures involved in handling the cockroaches and recording extracellular action potentials (spikes) with the SpikerBox apparatus as well as the importance of spike sorting for analysis in neuroscience. The spike sorting process requires students to choose the spike threshold and spike selection criteria and interact with the clustering process that forms the groups of similar spikes. Once the spike groups are identified, interspike intervals and neuron firing frequencies can be calculated and analyzed. A classic neurophysiology lab exercise is thus adapted to be interdisciplinary for underrepresented students in a small rural college.

Entities:  

Keywords:  SpikerBox apparatus; cockroaches; extracellular recordings; spike sorting

Mesh:

Year:  2021        PMID: 33661048      PMCID: PMC8091935          DOI: 10.1152/advan.00034.2020

Source DB:  PubMed          Journal:  Adv Physiol Educ        ISSN: 1043-4046            Impact factor:   2.288


  18 in total

1.  The mechanism of sensory transduction in the sensilla of the trochanteral hair plate of the cockroach, Periplaneta americana.

Authors:  A S French; E J Sanders
Journal:  Cell Tissue Res       Date:  1979-04-30       Impact factor: 5.249

2.  A student apparatus for recording action potentials in cockroach legs.

Authors:  T M Linder; J Palka
Journal:  Am J Physiol       Date:  1992-06

3.  On the origin of the extracellular action potential waveform: A modeling study.

Authors:  Carl Gold; Darrell A Henze; Christof Koch; György Buzsáki
Journal:  J Neurophysiol       Date:  2006-02-08       Impact factor: 2.714

4.  Using crickets to introduce neurophysiology to early undergraduate students.

Authors:  Ruben K Dagda; Rachael M Thalhauser; Raul Dagda; Timothy C Marzullo; Gregory J Gage
Journal:  J Undergrad Neurosci Educ       Date:  2013-10-15

5.  Performance evaluation of PCA-based spike sorting algorithms.

Authors:  Dimitrios A Adamos; Efstratios K Kosmidis; George Theophilidis
Journal:  Comput Methods Programs Biomed       Date:  2008-06-18       Impact factor: 5.428

6.  Grasshopper DCMD: An Undergraduate Electrophysiology Lab for Investigating Single-Unit Responses to Behaviorally-Relevant Stimuli.

Authors:  Dieu My T Nguyen; Mark Roper; Stanislav Mircic; Robert M Olberg; Gregory J Gage
Journal:  J Undergrad Neurosci Educ       Date:  2017-06-15

7.  Portable conduction velocity experiments using earthworms for the college and high school neuroscience teaching laboratory.

Authors:  Kyle M Shannon; Gregory J Gage; Aleksandra Jankovic; W Jeffrey Wilson; Timothy C Marzullo
Journal:  Adv Physiol Educ       Date:  2014-03       Impact factor: 2.288

8.  The SpikerBox: a low cost, open-source bioamplifier for increasing public participation in neuroscience inquiry.

Authors:  Timothy C Marzullo; Gregory J Gage
Journal:  PLoS One       Date:  2012-03-21       Impact factor: 3.240

9.  Utility and versatility of extracellular recordings from the cockroach for neurophysiological instruction and demonstration.

Authors:  Raddy L Ramos; Andrew Moiseff; Joshua C Brumberg
Journal:  J Undergrad Neurosci Educ       Date:  2007-06-15

10.  Neural circuit recording from an intact cockroach nervous system.

Authors:  Josh S Titlow; Zana R Majeed; H Bernard Hartman; Ellen Burns; Robin L Cooper
Journal:  J Vis Exp       Date:  2013-11-04       Impact factor: 1.355

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