Literature DB >> 33647940

Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions.

Pingxian Zhang1, Chunmei Zhu2, Yuke Geng1,3, Yifan Wang1, Ying Yang2, Qing Liu1, Weijun Guo1, Sadaruddin Chachar1, Adeel Riaz1, Shuangyong Yan4, Liwen Yang1, Keke Yi5, Changyin Wu2, Xiaofeng Gu1.   

Abstract

Both genetic and epigenetic information must be transferred from mother to daughter cells during cell division. The mechanisms through which information about chromatin states and epigenetic marks like histone 3 lysine 27 trimethylation (H3K27me3) are transferred have been characterized in animals; these processes are less well understood in plants. Here, based on characterization of a dwarf rice (Oryza sativa) mutant (dwarf-related wd40 protein 1, drw1) deficient for yeast CTF4 (CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4), we discovered that CTF4 orthologs in plants use common cellular machinery yet accomplish divergent functional outcomes. Specifically, drw1 exhibited no flowering-related phenotypes (as in the putatively orthologous Arabidopsis thaliana eol1 mutant), but displayed cell cycle arrest and DNA damage responses. Mechanistically, we demonstrate that DRW1 sustains normal cell cycle progression by modulating the expression of cell cycle inhibitors KIP-RELATED PROTEIN 1 (KRP1) and KRP5, and show that these effects are mediated by DRW1 binding their promoters and increasing H3K27me3 levels. Thus, although CTF4 orthologs ENHANCER OF LHP1 1 (EOL1) in Arabidopsis and DRW1 in rice are both expressed uniquely in dividing cells, commonly interact with several Polycomb complex subunits, and promote H3K27me3 deposition, we now know that their regulatory functions diverged substantially during plant evolution. Moreover, our work experimentally illustrates specific targets of CTF4/EOL1/DRW1, their protein-proteininteraction partners, and their chromatin/epigenetic effects in plants. © American Society of Plant Biologists 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 33647940      PMCID: PMC8254485          DOI: 10.1093/plcell/koab047

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  41 in total

1.  Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control.

Authors:  Margit Menges; Sarah M de Jager; Wilhelm Gruissem; James A H Murray
Journal:  Plant J       Date:  2005-02       Impact factor: 6.417

Review 2.  Histone methylation in higher plants.

Authors:  Chunyan Liu; Falong Lu; Xia Cui; Xiaofeng Cao
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

3.  The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice.

Authors:  Rosa Maria Barrôco; Adrian Peres; Anne-Marie Droual; Lieven De Veylder; Le Son Long Nguyen; Joris De Wolf; Vladimir Mironov; Rindert Peerbolte; Gerrit T S Beemster; Dirk Inzé; Willem F Broekaert; Valerie Frankard
Journal:  Plant Physiol       Date:  2006-09-29       Impact factor: 8.340

Review 4.  What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory.

Authors:  Philipp A Steffen; Leonie Ringrose
Journal:  Nat Rev Mol Cell Biol       Date:  2014-05       Impact factor: 94.444

Review 5.  Genome Regulation by Polycomb and Trithorax: 70 Years and Counting.

Authors:  Bernd Schuettengruber; Henri-Marc Bourbon; Luciano Di Croce; Giacomo Cavalli
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

6.  DNA replication-coupled histone modification maintains Polycomb gene silencing in plants.

Authors:  Danhua Jiang; Frédéric Berger
Journal:  Science       Date:  2017-08-17       Impact factor: 47.728

7.  Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes.

Authors:  Joanna Boruc; Evelien Mylle; Maria Duda; Rebecca De Clercq; Stephane Rombauts; Danny Geelen; Pierre Hilson; Dirk Inzé; Daniel Van Damme; Eugenia Russinova
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

8.  The TIGR Rice Genome Annotation Resource: improvements and new features.

Authors:  Shu Ouyang; Wei Zhu; John Hamilton; Haining Lin; Matthew Campbell; Kevin Childs; Françoise Thibaud-Nissen; Renae L Malek; Yuandan Lee; Li Zheng; Joshua Orvis; Brian Haas; Jennifer Wortman; C Robin Buell
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

9.  Photoperiodic regulation of flowering time through periodic histone deacetylation of the florigen gene FT.

Authors:  Xiaofeng Gu; Yizhong Wang; Yuehui He
Journal:  PLoS Biol       Date:  2013-09-03       Impact factor: 8.029

10.  The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.

Authors:  Xuehui Sun; Zhiguo Zhang; Jinxia Wu; Xuean Cui; Dan Feng; Kai Wang; Ming Xu; Li Zhou; Xiao Han; Xiaofeng Gu; Tiegang Lu
Journal:  PLoS Genet       Date:  2016-03-08       Impact factor: 5.917

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  4 in total

Review 1.  Plant synthetic epigenomic engineering for crop improvement.

Authors:  Liwen Yang; Pingxian Zhang; Yifan Wang; Guihua Hu; Weijun Guo; Xiaofeng Gu; Li Pu
Journal:  Sci China Life Sci       Date:  2022-07-15       Impact factor: 10.372

Review 2.  Polycomb Repressive Complex 2 in Eukaryotes-An Evolutionary Perspective.

Authors:  Mallika Vijayanathan; María Guadalupe Trejo-Arellano; Iva Mozgová
Journal:  Epigenomes       Date:  2022-01-17

3.  Phylogenomic Analyses of Alismatales Shed Light into Adaptations to Aquatic Environments.

Authors:  Ling-Yun Chen; Bei Lu; Diego F Morales-Briones; Michael L Moody; Fan Liu; Guang-Wan Hu; Chien-Hsun Huang; Jin-Ming Chen; Qing-Feng Wang
Journal:  Mol Biol Evol       Date:  2022-05-03       Impact factor: 8.800

Review 4.  Dynamics of H3K27me3 Modification on Plant Adaptation to Environmental Cues.

Authors:  Qingwen Shen; Yisheng Lin; Yingbo Li; Guifeng Wang
Journal:  Plants (Basel)       Date:  2021-06-08
  4 in total

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