Literature DB >> 24755934

What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory.

Philipp A Steffen1, Leonie Ringrose1.   

Abstract

In any biological system with memory, the state of the system depends on its history. Epigenetic memory maintains gene expression states through cell generations without a change in DNA sequence and in the absence of initiating signals. It is immensely powerful in biological systems - it adds long-term stability to gene expression states and increases the robustness of gene regulatory networks. The Polycomb group (PcG) and Trithorax group (TrxG) proteins can confer long-term, mitotically heritable memory by sustaining silent and active gene expression states, respectively. Several recent studies have advanced our understanding of the molecular mechanisms of this epigenetic memory during DNA replication and mitosis.

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Year:  2014        PMID: 24755934     DOI: 10.1038/nrm3789

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  166 in total

1.  Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene.

Authors:  M J Shimell; A J Peterson; J Burr; J A Simon; M B O'Connor
Journal:  Dev Biol       Date:  2000-02-01       Impact factor: 3.582

Review 2.  Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription.

Authors:  Rodrigo Bermejo; Mong Sing Lai; Marco Foiani
Journal:  Mol Cell       Date:  2012-03-30       Impact factor: 17.970

3.  Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes.

Authors:  Juan Manuel Caravaca; Greg Donahue; Justin S Becker; Ximiao He; Charles Vinson; Kenneth S Zaret
Journal:  Genes Dev       Date:  2013-01-25       Impact factor: 11.361

Review 4.  Regulation of nucleosome dynamics by histone modifications.

Authors:  Gabriel E Zentner; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

5.  TrxG and PcG proteins but not methylated histones remain associated with DNA through replication.

Authors:  Svetlana Petruk; Yurii Sedkov; Danika M Johnston; Jacob W Hodgson; Kathryn L Black; Sina K Kovermann; Samantha Beck; Eli Canaani; Hugh W Brock; Alexander Mazo
Journal:  Cell       Date:  2012-08-23       Impact factor: 41.582

6.  Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Authors:  Ragnhild Eskeland; Martin Leeb; Graeme R Grimes; Clémence Kress; Shelagh Boyle; Duncan Sproul; Nick Gilbert; Yuhong Fan; Arthur I Skoultchi; Anton Wutz; Wendy A Bickmore
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

7.  The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics.

Authors:  Shinya Ohta; Jimi-Carlo Bukowski-Wills; Luis Sanchez-Pulido; Flavia de Lima Alves; Laura Wood; Zhuo A Chen; Melpi Platani; Lutz Fischer; Damien F Hudson; Chris P Ponting; Tatsuo Fukagawa; William C Earnshaw; Juri Rappsilber
Journal:  Cell       Date:  2010-09-03       Impact factor: 41.582

8.  A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy.

Authors:  Daphne S Cabianca; Valentina Casa; Beatrice Bodega; Alexandros Xynos; Enrico Ginelli; Yujiro Tanaka; Davide Gabellini
Journal:  Cell       Date:  2012-04-26       Impact factor: 41.582

9.  Cohesin and polycomb proteins functionally interact to control transcription at silenced and active genes.

Authors:  Cheri A Schaaf; Ziva Misulovin; Maria Gause; Amanda Koenig; David W Gohara; Audrey Watson; Dale Dorsett
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

10.  A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression.

Authors:  C S Chan; L Rastelli; V Pirrotta
Journal:  EMBO J       Date:  1994-06-01       Impact factor: 11.598

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  138 in total

Review 1.  Epigenetic control in skin development, homeostasis and injury repair.

Authors:  Sangjo Kang; Gopal Chovatiya; Tudorita Tumbar
Journal:  Exp Dermatol       Date:  2019-02-12       Impact factor: 3.960

Review 2.  Regulation and role of post-translational modifications of enhancer of zeste homologue 2 in cancer development.

Authors:  Haiqi Lu; Guangliang Li; Chenyi Zhou; Wei Jin; Xiaoling Qian; Zhuo Wang; Hongming Pan; Hongchuan Jin; Xian Wang
Journal:  Am J Cancer Res       Date:  2016-12-01       Impact factor: 6.166

3.  Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.

Authors:  Sharmistha Kundu; Fei Ji; Hongjae Sunwoo; Gaurav Jain; Jeannie T Lee; Ruslan I Sadreyev; Job Dekker; Robert E Kingston
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

Review 4.  Molecular Mechanisms of Arsenic-Induced Disruption of DNA Repair.

Authors:  Lok Ming Tam; Nathan E Price; Yinsheng Wang
Journal:  Chem Res Toxicol       Date:  2020-02-07       Impact factor: 3.739

5.  Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals.

Authors:  Cesar Arenas-Mena; James A Coffman
Journal:  Dev Dyn       Date:  2015-08-04       Impact factor: 3.780

Review 6.  Polycomb repressive 2 complex-Molecular mechanisms of function.

Authors:  Valentina L Kouznetsova; Alex Tchekanov; Xiaoming Li; Xiaowen Yan; Igor F Tsigelny
Journal:  Protein Sci       Date:  2019-06-10       Impact factor: 6.725

7.  Sex combs reduced (Scr) regulatory region of Drosophila revisited.

Authors:  Juan M Calvo-Martín; Montserrat Papaceit; Carmen Segarra
Journal:  Mol Genet Genomics       Date:  2017-03-22       Impact factor: 3.291

8.  The bxdPRE/TRE element terminates passing through transcription.

Authors:  M M Erokhin; P V Elizar'ev; P G Georgiev; D A Chetverina
Journal:  Dokl Biochem Biophys       Date:  2017-04-19       Impact factor: 0.788

9.  RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2.

Authors:  Célia Alecki; Victoria Chiwara; Lionel A Sanz; Daniel Grau; Osvaldo Arias Pérez; Elodie L Boulier; Karim-Jean Armache; Frédéric Chédin; Nicole J Francis
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

10.  Drosophila O-GlcNAcase Deletion Globally Perturbs Chromatin O-GlcNAcylation.

Authors:  Ilhan Akan; Dona C Love; Katryn R Harwood; Michelle R Bond; John A Hanover
Journal:  J Biol Chem       Date:  2016-03-08       Impact factor: 5.157

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