Literature DB >> 35851940

Plant synthetic epigenomic engineering for crop improvement.

Liwen Yang1, Pingxian Zhang1,2, Yifan Wang1, Guihua Hu1, Weijun Guo1, Xiaofeng Gu3, Li Pu4.   

Abstract

Efforts have been directed to redesign crops with increased yield, stress adaptability, and nutritional value through synthetic biology-the application of engineering principles to biology. A recent expansion in our understanding of how epigenetic mechanisms regulate plant development and stress responses has unveiled a new set of resources that can be harnessed to develop improved crops, thus heralding the promise of "synthetic epigenetics." In this review, we summarize the latest advances in epigenetic regulation and highlight how innovative sequencing techniques, epigenetic editing, and deep learning-driven predictive tools can rapidly extend these insights. We also proposed the future directions of synthetic epigenetics for the development of engineered smart crops that can actively monitor and respond to internal and external cues throughout their life cycles.
© 2022. Science China Press and Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  crop improvement; epigenetics; synthetic biology; synthetic epigenetics

Year:  2022        PMID: 35851940     DOI: 10.1007/s11427-021-2131-6

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   10.372


  117 in total

1.  Design of orthogonal regulatory systems for modulating gene expression in plants.

Authors:  Michael S Belcher; Khanh M Vuu; Andy Zhou; Nasim Mansoori; Amanda Agosto Ramos; Mitchell G Thompson; Henrik V Scheller; Dominique Loqué; Patrick M Shih
Journal:  Nat Chem Biol       Date:  2020-05-18       Impact factor: 15.040

Review 2.  Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors.

Authors:  Andrew V Anzalone; Luke W Koblan; David R Liu
Journal:  Nat Biotechnol       Date:  2020-06-22       Impact factor: 54.908

3.  Environmentally controlled invasion of cancer cells by engineered bacteria.

Authors:  J Christopher Anderson; Elizabeth J Clarke; Adam P Arkin; Christopher A Voigt
Journal:  J Mol Biol       Date:  2005-11-14       Impact factor: 5.469

4.  Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors:  Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal:  Nat Methods       Date:  2013-10-06       Impact factor: 28.547

5.  An m6A-YTH Module Controls Developmental Timing and Morphogenesis in Arabidopsis.

Authors:  Laura Arribas-Hernández; Simon Bressendorff; Mathias Henning Hansen; Christian Poulsen; Susanne Erdmann; Peter Brodersen
Journal:  Plant Cell       Date:  2018-04-11       Impact factor: 11.277

Review 6.  Advances in epigenetics link genetics to the environment and disease.

Authors:  Giacomo Cavalli; Edith Heard
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

7.  Nuclear-encoded synthesis of the D1 subunit of photosystem II increases photosynthetic efficiency and crop yield.

Authors:  Juan-Hua Chen; Si-Ting Chen; Ning-Yu He; Qing-Long Wang; Yao Zhao; Wei Gao; Fang-Qing Guo
Journal:  Nat Plants       Date:  2020-04-20       Impact factor: 15.793

8.  DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning.

Authors:  Christof Angermueller; Heather J Lee; Wolf Reik; Oliver Stegle
Journal:  Genome Biol       Date:  2017-04-11       Impact factor: 13.583

9.  Artificial photosynthetic cell producing energy for protein synthesis.

Authors:  Samuel Berhanu; Takuya Ueda; Yutetsu Kuruma
Journal:  Nat Commun       Date:  2019-03-22       Impact factor: 14.919

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