Literature DB >> 33620442

Similar solutions to a common challenge: regulation of genes encoding Ralstonia solanacearum xanthine dehydrogenase.

Smitha Sivapragasam1, Arpita Ghosh1, Sanjay Kumar1, Danté T Johnson1, Anne Grove1.   

Abstract

The stringent response involves accumulation of (p)ppGpp, and it ensures that survival is prioritized. Production of (p)ppGpp requires purine synthesis, and upregulation of an operon that encodes the purine salvage enzyme xanthine dehydrogenase (Xdh) has been observed during stringent response in some bacterial species, where direct binding of ppGpp to a TetR-family transcription factor is responsible for increased xdh gene expression. We show here that the plant pathogen Ralstonia solanacearum has a regulatory system in which the LysR-family transcription factor XanR controls expression of the xan operon; this operon encodes Xdh as well as other enzymes involved in purine salvage, which favor accumulation of xanthine. XanR bound upstream of the xan operon, a binding that was attenuated on addition of either ppGpp or cyclic di-guanosine monophosphate (c-di-GMP). Using a reporter in which enhanced green fluorescent protein (EGFP) is expressed under control of a modified xan promoter, XanR was shown to repress EGFP production. Our data suggest that R. solanacearum features a regulatory mechanism in which expression of genes encoding purine salvage enzymes is controlled by a transcription factor that belongs to a different protein family, yet performs similar regulatory functions.
© The Author(s) 2021. Published by Oxford University Press on behalf of FEMS.

Entities:  

Keywords:  zzm321990 Ralstonia solanacearumzzm321990 ; (p)ppGpp; LTTR; gene regulation; purine salvage; xanthine dehydrogenase

Mesh:

Substances:

Year:  2021        PMID: 33620442      PMCID: PMC8324234          DOI: 10.1093/femsle/fnab022

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  41 in total

1.  A recommended workflow for DNase I footprinting using a capillary electrophoresis genetic analyzer.

Authors:  Smitha Sivapragasam; Anuja Pande; Anne Grove
Journal:  Anal Biochem       Date:  2015-04-20       Impact factor: 3.365

Review 2.  Diversity in (p)ppGpp metabolism and effectors.

Authors:  Kuanqing Liu; Alycia N Bittner; Jue D Wang
Journal:  Curr Opin Microbiol       Date:  2015-01-28       Impact factor: 7.934

3.  The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation.

Authors:  Wilma Ross; Catherine E Vrentas; Patricia Sanchez-Vazquez; Tamas Gaal; Richard L Gourse
Journal:  Mol Cell       Date:  2013-04-25       Impact factor: 17.970

4.  Full-length structures of BenM and two variants reveal different oligomerization schemes for LysR-type transcriptional regulators.

Authors:  Ajchareeya Ruangprasert; Sarah H Craven; Ellen L Neidle; Cory Momany
Journal:  J Mol Biol       Date:  2010-10-07       Impact factor: 5.469

5.  Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator.

Authors:  Obidimma C Ezezika; Sandra Haddad; Todd J Clark; Ellen L Neidle; Cory Momany
Journal:  J Mol Biol       Date:  2006-10-04       Impact factor: 5.469

6.  Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model.

Authors:  Dong-Eun Chang; Darren J Smalley; Tyrrell Conway
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

7.  Mechanism of repression by Bacillus subtilis CcpC, a LysR family regulator.

Authors:  Sam-In Kim; Cécile Jourlin-Castelli; Stephen R Wellington; Abraham L Sonenshein
Journal:  J Mol Biol       Date:  2003-12-05       Impact factor: 5.469

8.  The in planta transcriptome of Ralstonia solanacearum: conserved physiological and virulence strategies during bacterial wilt of tomato.

Authors:  Jonathan M Jacobs; Lavanya Babujee; Fanhong Meng; Annett Milling; Caitilyn Allen
Journal:  mBio       Date:  2012-08-31       Impact factor: 7.867

9.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

10.  The solution configurations of inactive and activated DntR have implications for the sliding dimer mechanism of LysR transcription factors.

Authors:  Michael Lerche; Cyril Dian; Adam Round; Rosa Lönneborg; Peter Brzezinski; Gordon A Leonard
Journal:  Sci Rep       Date:  2016-01-28       Impact factor: 4.379

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