Literature DB >> 25636134

Diversity in (p)ppGpp metabolism and effectors.

Kuanqing Liu1, Alycia N Bittner2, Jue D Wang3.   

Abstract

Bacteria produce guanosine tetraphosphate and pentaphosphate, collectively named (p)ppGpp, in response to a variety of environmental stimuli. These two remarkable molecules regulate many cellular processes, including the central dogma processes and metabolism, to ensure survival and adaptation. Work in Escherichia coli laid the foundation for understanding the molecular details of (p)ppGpp and its cellular functions. As recent studies expand to other species, it is apparent that there exists considerable variation, with respect to not only (p)ppGpp metabolism, but also to its mechanism of action. From an evolutionary standpoint, this diversification is an elegant example of how different species adapt a particular regulatory network to their diverse lifestyles.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25636134      PMCID: PMC4380541          DOI: 10.1016/j.mib.2015.01.012

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  73 in total

1.  DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP.

Authors:  Brian J Paul; Melanie M Barker; Wilma Ross; David A Schneider; Cathy Webb; John W Foster; Richard L Gourse
Journal:  Cell       Date:  2004-08-06       Impact factor: 41.582

2.  The transcription factor DksA prevents conflicts between DNA replication and transcription machinery.

Authors:  Ashley K Tehranchi; Matthew D Blankschien; Yan Zhang; Jennifer A Halliday; Anjana Srivatsan; Jia Peng; Christophe Herman; Jue D Wang
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

Review 3.  (p)ppGpp: still magical?

Authors:  Katarzyna Potrykus; Michael Cashel
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

4.  Two small (p)ppGpp synthases in Staphylococcus aureus mediate tolerance against cell envelope stress conditions.

Authors:  Tobias Geiger; Benjamin Kästle; Fabio Lino Gratani; Christiane Goerke; Christiane Wolz
Journal:  J Bacteriol       Date:  2013-12-13       Impact factor: 3.490

5.  ppGpp is the major source of growth rate control in E. coli.

Authors:  Katarzyna Potrykus; Helen Murphy; Nadège Philippe; Michael Cashel
Journal:  Environ Microbiol       Date:  2010-10-15       Impact factor: 5.491

6.  Transcription of the Escherichia coli fatty acid synthesis operon fabHDG is directly activated by FadR and inhibited by ppGpp.

Authors:  Laetitia My; Brian Rekoske; Justin J Lemke; Julie P Viala; Richard L Gourse; Emmanuelle Bouveret
Journal:  J Bacteriol       Date:  2013-06-14       Impact factor: 3.490

7.  The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life.

Authors:  Gemma C Atkinson; Tanel Tenson; Vasili Hauryliuk
Journal:  PLoS One       Date:  2011-08-09       Impact factor: 3.240

8.  A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth.

Authors:  Christopher W Lennon; Kimberly C Lemmer; Jessica L Irons; Max I Sellman; Timothy J Donohue; Richard L Gourse; Wilma Ross
Journal:  MBio       Date:  2014-04-29       Impact factor: 7.867

9.  Structural and functional insights into the mode of action of a universally conserved Obg GTPase.

Authors:  Boya Feng; Chandra Sekhar Mandava; Qiang Guo; Jie Wang; Wei Cao; Ningning Li; Yixiao Zhang; Yanqing Zhang; Zhixin Wang; Jiawei Wu; Suparna Sanyal; Jianlin Lei; Ning Gao
Journal:  PLoS Biol       Date:  2014-05-20       Impact factor: 8.029

10.  The stringent response and cell cycle arrest in Escherichia coli.

Authors:  Daniel J Ferullo; Susan T Lovett
Journal:  PLoS Genet       Date:  2008-12-12       Impact factor: 5.917

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  70 in total

Review 1.  (p)ppGpp and Its Role in Bacterial Persistence: New Challenges.

Authors:  Olga Pacios; Lucia Blasco; Inés Bleriot; Laura Fernandez-Garcia; Antón Ambroa; María López; German Bou; Rafael Cantón; Rodolfo Garcia-Contreras; Thomas K Wood; Maria Tomás
Journal:  Antimicrob Agents Chemother       Date:  2020-09-21       Impact factor: 5.191

Review 2.  Cyclic diguanylate signaling in Gram-positive bacteria.

Authors:  Erin B Purcell; Rita Tamayo
Journal:  FEMS Microbiol Rev       Date:  2016-06-26       Impact factor: 16.408

3.  Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.

Authors:  Brent W Anderson; Kuanqing Liu; Christine Wolak; Katarzyna Dubiel; Fukang She; Kenneth A Satyshur; James L Keck; Jue D Wang
Journal:  Elife       Date:  2019-09-25       Impact factor: 8.140

Review 4.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

5.  CodY Regulates SigD Levels and Activity by Binding to Three Sites in the fla/che Operon.

Authors:  Qutaiba O Ababneh; Jennifer K Herman
Journal:  J Bacteriol       Date:  2015-07-13       Impact factor: 3.490

Review 6.  Sizing up the bacterial cell cycle.

Authors:  Lisa Willis; Kerwyn Casey Huang
Journal:  Nat Rev Microbiol       Date:  2017-08-14       Impact factor: 60.633

Review 7.  The stringent response and Mycobacterium tuberculosis pathogenesis.

Authors:  Jerome Prusa; Dennis X Zhu; Christina L Stallings
Journal:  Pathog Dis       Date:  2018-07-01       Impact factor: 3.166

8.  Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein.

Authors:  Joshua T Tsai; Nuri Sung; Jungsoon Lee; Changsoo Chang; Sukyeong Lee; Francis T F Tsai
Journal:  J Mol Biol       Date:  2019-06-14       Impact factor: 5.469

9.  Catalytic mechanism and allosteric regulation of an oligomeric (p)ppGpp synthetase by an alarmone.

Authors:  Wieland Steinchen; Jan S Schuhmacher; Florian Altegoer; Christopher D Fage; Vasundara Srinivasan; Uwe Linne; Mohamed A Marahiel; Gert Bange
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

10.  ComGA-RelA interaction and persistence in the Bacillus subtilis K-state.

Authors:  Jeanette Hahn; Andrew W Tanner; Valerie J Carabetta; Ileana M Cristea; David Dubnau
Journal:  Mol Microbiol       Date:  2015-05-15       Impact factor: 3.501

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