Literature DB >> 33597523

Active-site loop variations adjust activity and selectivity of the cumene dioxygenase.

Peter M Heinemann1, Daniel Armbruster1, Bernhard Hauer2.   

Abstract

Active-site loops play essential roles in various catalytically important enzyme properties like activity, selectivity, and substrate scope. However, their high flexibility and diversity makes them challenging to incorporate into rational enzyme engineering strategies. Here, we report the engineering of hot-spots in loops of the cumene dioxygenase from Pseudomonas fluorescens IP01 with high impact on activity, regio- and enantioselectivity. Libraries based on alanine scan, sequence alignments, and deletions along with a novel insertion approach result in up to 16-fold increases in activity and the formation of novel products and enantiomers. CAVER analysis suggests possible increases in the active pocket volume and formation of new active-site tunnels, suggesting additional degrees of freedom of the substrate in the pocket. The combination of identified hot-spots with the Linker In Loop Insertion approach proves to be a valuable addition to future loop engineering approaches for enhanced biocatalysts.

Entities:  

Year:  2021        PMID: 33597523     DOI: 10.1038/s41467-021-21328-8

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  46 in total

1.  An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenases.

Authors:  Joydeep Chakraborty; Debajyoti Ghosal; Arindam Dutta; Tapan K Dutta
Journal:  J Biomol Struct Dyn       Date:  2012-06-12

2.  Biochemistry. Loop grafting and the origins of enzyme species.

Authors:  Dan S Tawfik
Journal:  Science       Date:  2006-01-27       Impact factor: 47.728

3.  Design and evolution of new catalytic activity with an existing protein scaffold.

Authors:  Hee-Sung Park; Sung-Hun Nam; Jin Kak Lee; Chang No Yoon; Bengt Mannervik; Stephen J Benkovic; Hak-Sung Kim
Journal:  Science       Date:  2006-01-27       Impact factor: 47.728

4.  Engineering of solvent-exposed loops in Escherichia coli beta-galactosidase.

Authors:  J X Feliu; A Villaverde
Journal:  FEBS Lett       Date:  1998-08-28       Impact factor: 4.124

Review 5.  Unlocked potential of dynamic elements in protein structures: channels and loops.

Authors:  Nico Kreß; Julia M Halder; Lea R Rapp; Bernhard Hauer
Journal:  Curr Opin Chem Biol       Date:  2018-10-04       Impact factor: 8.822

6.  Variations in the stability of NCR ene reductase by rational enzyme loop modulation.

Authors:  Sabrina Reich; Nico Kress; Bettina M Nestl; Bernhard Hauer
Journal:  J Struct Biol       Date:  2013-04-17       Impact factor: 2.867

7.  Engineering the thermostability of β-glucuronidase from Penicillium purpurogenum Li-3 by loop transplant.

Authors:  Xudong Feng; Heng Tang; Beijia Han; Liang Zhang; Bo Lv; Chun Li
Journal:  Appl Microbiol Biotechnol       Date:  2016-06-21       Impact factor: 4.813

8.  The role of protein dynamics in the evolution of new enzyme function.

Authors:  Eleanor Campbell; Miriam Kaltenbach; Galen J Correy; Paul D Carr; Benjamin T Porebski; Emma K Livingstone; Livnat Afriat-Jurnou; Ashley M Buckle; Martin Weik; Florian Hollfelder; Nobuhiko Tokuriki; Colin J Jackson
Journal:  Nat Chem Biol       Date:  2016-09-12       Impact factor: 15.040

Review 9.  Rieske business: structure-function of Rieske non-heme oxygenases.

Authors:  Daniel J Ferraro; Lokesh Gakhar; S Ramaswamy
Journal:  Biochem Biophys Res Commun       Date:  2005-09-08       Impact factor: 3.575

10.  Discovery of a regioselectivity switch in nitrating P450s guided by molecular dynamics simulations and Markov models.

Authors:  Sheel C Dodani; Gert Kiss; Jackson K B Cahn; Ye Su; Vijay S Pande; Frances H Arnold
Journal:  Nat Chem       Date:  2016-03-21       Impact factor: 24.427

View more
  2 in total

1.  Thermoadaptation in an Ancestral Diterpene Cyclase by Altered Loop Stability.

Authors:  David A Hueting; Sudarsana R Vanga; Per-Olof Syrén
Journal:  J Phys Chem B       Date:  2022-05-18       Impact factor: 3.466

2.  Design principles for site-selective hydroxylation by a Rieske oxygenase.

Authors:  Jianxin Liu; Jiayi Tian; Christopher Perry; April L Lukowski; Tzanko I Doukov; Alison R H Narayan; Jennifer Bridwell-Rabb
Journal:  Nat Commun       Date:  2022-01-11       Impact factor: 14.919

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.