Literature DB >> 16439663

Design and evolution of new catalytic activity with an existing protein scaffold.

Hee-Sung Park1, Sung-Hun Nam, Jin Kak Lee, Chang No Yoon, Bengt Mannervik, Stephen J Benkovic, Hak-Sung Kim.   

Abstract

The design of enzymes with new functions and properties has long been a goal in protein engineering. Here, we report a strategy to change the catalytic activity of an existing protein scaffold. This was achieved by simultaneous incorporation and adjustment of functional elements through insertion, deletion, and substitution of several active site loops, followed by point mutations to fine-tune the activity. Using this approach, we were able to introduce beta-lactamase activity into the alphabeta/betaalpha metallohydrolase scaffold of glyoxalase II. The resulting enzyme, evMBL8 (evolved metallo beta-lactamase 8), completely lost its original activity and, instead, catalyzed the hydrolysis of cefotaxime with a (kcat/Km)app of 1.8 x 10(2) (mole/liter)(-1) second(-1), thus increasing resistance to Escherichia coli growth on cefotaxime by a factor of about 100.

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Year:  2006        PMID: 16439663     DOI: 10.1126/science.1118953

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  62 in total

Review 1.  Toward a systems biology perspective on enzyme evolution.

Authors:  Shelley D Copley
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

2.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

3.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

4.  Local encoding of computationally designed enzyme activity.

Authors:  Malin Allert; Mary A Dwyer; Homme W Hellinga
Journal:  J Mol Biol       Date:  2006-12-05       Impact factor: 5.469

5.  Construction and flow cytometric screening of targeted enzyme libraries.

Authors:  Navin Varadarajan; Jason R Cantor; George Georgiou; Brent L Iverson
Journal:  Nat Protoc       Date:  2009-05-21       Impact factor: 13.491

6.  Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.

Authors:  Jörg Claren; Christoph Malisi; Birte Höcker; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

Review 7.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

8.  Characterization and crystal structure of Escherichia coli KDPGal aldolase.

Authors:  Matthew J Walters; Velupillai Srikannathasan; Andrew R McEwan; James H Naismith; Carol A Fierke; Eric J Toone
Journal:  Bioorg Med Chem       Date:  2007-10-18       Impact factor: 3.641

9.  A facile strategy for selective incorporation of phosphoserine into histones.

Authors:  Sangsik Lee; Seunghee Oh; Aerin Yang; Jihyo Kim; Dieter Söll; Daeyoup Lee; Hee-Sung Park
Journal:  Angew Chem Int Ed Engl       Date:  2013-03-26       Impact factor: 15.336

10.  Replacing Mn(2+) with Co(2+) in human arginase i enhances cytotoxicity toward l-arginine auxotrophic cancer cell lines.

Authors:  Everett M Stone; Evan S Glazer; Lynne Chantranupong; Paul Cherukuri; Robert M Breece; David L Tierney; Steven A Curley; Brent L Iverson; George Georgiou
Journal:  ACS Chem Biol       Date:  2010-03-19       Impact factor: 5.100

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