Literature DB >> 33595745

Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea.

Chandra Risdian1,2, Wiebke Landwehr1,3, Manfred Rohde4, Peter Schumann5, Richard L Hahnke5, Cathrin Spröer5, Boyke Bunk5, Peter Kämpfer6, Peter J Schupp7, Joachim Wink8.   

Abstract

A novel actinobacterium, designated ASO4wetT, was isolated from the unidentified sponge (SO4) in the deep sea collected of the North Atlantic Ocean. Study of 16S rRNA gene sequences indicated that strain ASO4wetT is a member of the genus Streptomyces and showed the closest similarities to Streptomyces karpasiensis K413T (98.87 %), Streptomyces glycovorans YIM M 10366T (98.38 %), and Streptomyces abyssalis YIM M 10400T (97.53 %). Strain ASO4wetT contained MK-9(H8) as the predominant menaquinone and the major fatty acids are iso-C16:0, anteiso-C15:0, and iso-C15:0. Polyphasic taxonomy was carried out between strain ASO4wetT and its phylogenetically closely related Streptomyces strains, which further elucidated their relatedness and revealed that strain ASO4wetT could be distinguished from currently known Streptomyces species. Strain ASO4wetT clearly represents a novel species in genus Streptomyces. We propose the name Streptomyces bathyalis sp. nov., with the type strain ASO4wetT (= DSM 106605T = NCCB 100657T). Analysis of the whole-genome sequence of S. bathyalis revealed that genome size is 7,377,472 bp with 6332 coding sequences.

Entities:  

Keywords:  Deep‐sea sponge; Polyphasic taxonomy; Streptomyces; The North Atlantic Ocean

Year:  2021        PMID: 33595745      PMCID: PMC7979654          DOI: 10.1007/s10482-021-01528-4

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  39 in total

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Journal:  Int J Syst Evol Microbiol       Date:  2011-11-18       Impact factor: 2.747

Review 2.  The discriminatory power of ribotyping as automatable technique for differentiation of bacteria.

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Journal:  Syst Appl Microbiol       Date:  2013-07-01       Impact factor: 4.022

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4.  Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp. nov. and Streptomyces davaonensis sp. nov.

Authors:  Wiebke Landwehr; Peter Kämpfer; Stefanie P Glaeser; Christian Rückert; Jörn Kalinowski; Jochen Blom; Alexander Goesmann; Matthias Mack; Peter Schumann; Ewelina Atasayar; Richard L Hahnke; Manfred Rohde; Karin Martin; Marc Stadler; Joachim Wink
Journal:  Int J Syst Evol Microbiol       Date:  2017-12-11       Impact factor: 2.747

5.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

6.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

7.  Inexpensive multiplexed library preparation for megabase-sized genomes.

Authors:  Michael Baym; Sergey Kryazhimskiy; Tami D Lieberman; Hattie Chung; Michael M Desai; Roy Kishony
Journal:  PLoS One       Date:  2015-05-22       Impact factor: 3.240

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  Tetroazolemycins A and B, two new oxazole-thiazole siderophores from deep-sea Streptomyces olivaceus FXJ8.012.

Authors:  Ning Liu; Fei Shang; Lijun Xi; Ying Huang
Journal:  Mar Drugs       Date:  2013-05-10       Impact factor: 5.118

Review 10.  Antibiotics from Deep-Sea Microorganisms: Current Discoveries and Perspectives.

Authors:  Emiliana Tortorella; Pietro Tedesco; Fortunato Palma Esposito; Grant Garren January; Renato Fani; Marcel Jaspars; Donatella de Pascale
Journal:  Mar Drugs       Date:  2018-09-29       Impact factor: 5.118

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  1 in total

1.  Photobacterium arenosum WH24, Isolated from the Gill of Pacific Oyster Crassostrea gigas from the North Sea of Germany: Co-cultivation and Prediction of Virulence.

Authors:  Hani Pira; Chandra Risdian; Mathias Müsken; Peter J Schupp; Joachim Wink
Journal:  Curr Microbiol       Date:  2022-06-15       Impact factor: 2.343

  1 in total

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