Literature DB >> 34331034

Tissue clearing to examine tumour complexity in three dimensions.

Jorge Almagro1, Hendrik A Messal2, May Zaw Thin3, Jacco van Rheenen2, Axel Behrens4,5,6.   

Abstract

The visualization of whole organs and organisms through tissue clearing and fluorescence volumetric imaging has revolutionized the way we look at biological samples. Its application to solid tumours is changing our perception of tumour architecture, revealing signalling networks and cell interactions critical in tumour progression, and provides a powerful new strategy for cancer diagnostics. This Review introduces the latest advances in tissue clearing and three-dimensional imaging, examines the challenges in clearing epithelia - the tissue of origin of most malignancies - and discusses the insights that tissue clearing has brought to cancer research, as well as the prospective applications to experimental and clinical oncology.
© 2021. Springer Nature Limited.

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Year:  2021        PMID: 34331034     DOI: 10.1038/s41568-021-00382-w

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  141 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.

Authors:  Nicolas Renier; Zhuhao Wu; David J Simon; Jing Yang; Pablo Ariel; Marc Tessier-Lavigne
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

3.  Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens.

Authors:  A H Voie; D H Burns; F A Spelman
Journal:  J Microsc       Date:  1993-06       Impact factor: 1.758

4.  Tissue clonality of dendritic cell subsets and emergency DCpoiesis revealed by multicolor fate mapping of DC progenitors.

Authors:  Mar Cabeza-Cabrerizo; Janneke van Blijswijk; Stephan Wienert; Daniel Heim; Robert P Jenkins; Probir Chakravarty; Neil Rogers; Bruno Frederico; Sophie Acton; Evelyne Beerling; Jacco van Rheenen; Hans Clevers; Barbara U Schraml; Marc Bajénoff; Michael Gerner; Ronald N Germain; Erik Sahai; Frederick Klauschen; Caetano Reis E Sousa
Journal:  Sci Immunol       Date:  2019-03-01

5.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

6.  Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution.

Authors:  Shimpei I Kubota; Kei Takahashi; Jun Nishida; Yasuyuki Morishita; Shogo Ehata; Kazuki Tainaka; Kohei Miyazono; Hiroki R Ueda
Journal:  Cell Rep       Date:  2017-07-05       Impact factor: 9.423

7.  Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity.

Authors:  Nobuyuki Tanaka; Shigeaki Kanatani; Raju Tomer; Cecilia Sahlgren; Pauliina Kronqvist; Dagmara Kaczynska; Lauri Louhivuori; Lorand Kis; Claes Lindh; Przemysław Mitura; Andrzej Stepulak; Sara Corvigno; Johan Hartman; Patrick Micke; Artur Mezheyeuski; Carina Strell; Joseph W Carlson; Carlos Fernández Moro; Hanna Dahlstrand; Arne Östman; Kazuhiro Matsumoto; Peter Wiklund; Mototsugu Oya; Ayako Miyakawa; Karl Deisseroth; Per Uhlén
Journal:  Nat Biomed Eng       Date:  2017-10-02       Impact factor: 25.671

Review 8.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

9.  Enriched environment reduces glioma growth through immune and non-immune mechanisms in mice.

Authors:  Stefano Garofalo; Giuseppina D'Alessandro; Giuseppina Chece; Frederic Brau; Laura Maggi; Alessandro Rosa; Alessandra Porzia; Fabrizio Mainiero; Vincenzo Esposito; Clotilde Lauro; Giorgia Benigni; Giovanni Bernardini; Angela Santoni; Cristina Limatola
Journal:  Nat Commun       Date:  2015-03-30       Impact factor: 14.919

10.  Cep55 promotes cytokinesis of neural progenitors but is dispensable for most mammalian cell divisions.

Authors:  Antonio Tedeschi; Jorge Almagro; Matthew J Renshaw; Hendrik A Messal; Axel Behrens; Mark Petronczki
Journal:  Nat Commun       Date:  2020-04-08       Impact factor: 14.919

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  9 in total

Review 1.  Multispectral confocal 3D imaging of intact healthy and tumor tissue using mLSR-3D.

Authors:  Ravian L van Ineveld; Raphaël Collot; Mario Barrera Román; Anna Pagliaro; Nils Bessler; Hendrikus C R Ariese; Michiel Kleinnijenhuis; Marcel Kool; Maria Alieva; Susana M Chuva de Sousa Lopes; Ellen J Wehrens; Anne C Rios
Journal:  Nat Protoc       Date:  2022-09-30       Impact factor: 17.021

Review 2.  Insights and opportunities at the crossroads of cancer and neuroscience.

Authors:  Chenchen Pan; Frank Winkler
Journal:  Nat Cell Biol       Date:  2022-09-12       Impact factor: 28.213

3.  Fourier light-field imaging of human organoids with a hybrid point-spread function.

Authors:  Wenhao Liu; Ge-Ah R Kim; Shuichi Takayama; Shu Jia
Journal:  Biosens Bioelectron       Date:  2022-03-26       Impact factor: 12.545

Review 4.  3D imaging for driving cancer discovery.

Authors:  Ravian L van Ineveld; Esmée J van Vliet; Ellen J Wehrens; Maria Alieva; Anne C Rios
Journal:  EMBO J       Date:  2022-04-11       Impact factor: 14.012

Review 5.  Microscopic Visualization of Cell-Cell Adhesion Complexes at Micro and Nanoscale.

Authors:  Bieke Vanslembrouck; Jian-Hua Chen; Carolyn Larabell; Jolanda van Hengel
Journal:  Front Cell Dev Biol       Date:  2022-04-20

Review 6.  Optical tissue clearing associated with 3D imaging: application in preclinical and clinical studies.

Authors:  Cinzia Brenna; Carolina Simioni; Gabriele Varano; Ilaria Conti; Eva Costanzi; Mattia Melloni; Luca Maria Neri
Journal:  Histochem Cell Biol       Date:  2022-03-02       Impact factor: 2.531

7.  A 3D Analysis of Cleared Human Melanoma.

Authors:  Vicente Llorente; Daniel Sanderson; Alejandro Martín-Gorgojo; Rafael Samaniego; Manuel Desco; María Victoria Gómez-Gaviro
Journal:  Biomedicines       Date:  2022-07-02

Review 8.  Understanding Breast Cancers through Spatial and High-Resolution Visualization Using Imaging Technologies.

Authors:  Haruko Takahashi; Daisuke Kawahara; Yutaka Kikuchi
Journal:  Cancers (Basel)       Date:  2022-08-23       Impact factor: 6.575

9.  Three-dimensional visualization of cerebral blood vessels and neural changes in thick ischemic rat brain slices using tissue clearing.

Authors:  Eun-Joo Lee; Sung-Kuk Hong; Dong-Hwa Choi; Sang-Il Gum; Mee Yul Hwang; Dong Sun Kim; Ji Won Oh; Eun-Shil Lee
Journal:  Sci Rep       Date:  2022-09-23       Impact factor: 4.996

  9 in total

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