Literature DB >> 33561376

Data-driven cardiovascular flow modelling: examples and opportunities.

Amirhossein Arzani1, Scott T M Dawson2.   

Abstract

High-fidelity blood flow modelling is crucial for enhancing our understanding of cardiovascular disease. Despite significant advances in computational and experimental characterization of blood flow, the knowledge that we can acquire from such investigations remains limited by the presence of uncertainty in parameters, low resolution, and measurement noise. Additionally, extracting useful information from these datasets is challenging. Data-driven modelling techniques have the potential to overcome these challenges and transform cardiovascular flow modelling. Here, we review several data-driven modelling techniques, highlight the common ideas and principles that emerge across numerous such techniques, and provide illustrative examples of how they could be used in the context of cardiovascular fluid mechanics. In particular, we discuss principal component analysis (PCA), robust PCA, compressed sensing, the Kalman filter for data assimilation, low-rank data recovery, and several additional methods for reduced-order modelling of cardiovascular flows, including the dynamic mode decomposition and the sparse identification of nonlinear dynamics. All techniques are presented in the context of cardiovascular flows with simple examples. These data-driven modelling techniques have the potential to transform computational and experimental cardiovascular research, and we discuss challenges and opportunities in applying these techniques in the field, looking ultimately towards data-driven patient-specific blood flow modelling.

Entities:  

Keywords:  blood flow; data science; data-driven dynamical systems; haemodynamics; reduced-order modelling; sparse sensing

Mesh:

Year:  2021        PMID: 33561376      PMCID: PMC8086862          DOI: 10.1098/rsif.2020.0802

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  40 in total

1.  Aortic 4D flow MRI in 2 minutes using compressed sensing, respiratory controlled adaptive k-space reordering, and inline reconstruction.

Authors:  Liliana E Ma; Michael Markl; Kelvin Chow; Hyungkyu Huh; Christoph Forman; Alireza Vali; Andreas Greiser; James Carr; Susanne Schnell; Alex J Barker; Ning Jin
Journal:  Magn Reson Med       Date:  2019-02-25       Impact factor: 4.668

2.  Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling.

Authors:  P Perdikaris; M Raissi; A Damianou; N D Lawrence; G E Karniadakis
Journal:  Proc Math Phys Eng Sci       Date:  2017-02       Impact factor: 2.704

3.  Discovering governing equations from data by sparse identification of nonlinear dynamical systems.

Authors:  Steven L Brunton; Joshua L Proctor; J Nathan Kutz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

4.  Multiscale Systems Biology Model of Calcific Aortic Valve Disease Progression.

Authors:  Amirhossein Arzani; Kristyn S Masters; Mohammad R K Mofrad
Journal:  ACS Biomater Sci Eng       Date:  2017-06-27

5.  Denoising and spatial resolution enhancement of 4D flow MRI using proper orthogonal decomposition and lasso regularization.

Authors:  Mojtaba F Fathi; Ali Bakhshinejad; Ahmadreza Baghaie; David Saloner; Raphael H Sacho; Vitaliy L Rayz; Roshan M D'Souza
Journal:  Comput Med Imaging Graph       Date:  2018-08-07       Impact factor: 4.790

6.  Direct numerical simulation of transitional flow in a patient-specific intracranial aneurysm.

Authors:  Kristian Valen-Sendstad; Kent-André Mardal; Mikael Mortensen; Bjørn Anders Pettersson Reif; Hans Petter Langtangen
Journal:  J Biomech       Date:  2011-09-15       Impact factor: 2.712

7.  Bulk Flow and Near Wall Hemodynamics of the Rabbit Aortic Arch: A 4D PC-MRI Derived CFD Study.

Authors:  David Molony; Jaekeun Park; Lei Zhou; Candace Fleischer; He-Ying Sun; Xiaoping Hu; John Oshinski; Habib Samady; Don P Giddens; Amir Rezvan
Journal:  J Biomech Eng       Date:  2018-08-21       Impact factor: 2.097

8.  A statistical shape modelling framework to extract 3D shape biomarkers from medical imaging data: assessing arch morphology of repaired coarctation of the aorta.

Authors:  Jan L Bruse; Kristin McLeod; Giovanni Biglino; Hopewell N Ntsinjana; Claudio Capelli; Tain-Yen Hsia; Maxime Sermesant; Xavier Pennec; Andrew M Taylor; Silvia Schievano
Journal:  BMC Med Imaging       Date:  2016-05-31       Impact factor: 1.930

9.  Data-driven discovery of partial differential equations.

Authors:  Samuel H Rudy; Steven L Brunton; Joshua L Proctor; J Nathan Kutz
Journal:  Sci Adv       Date:  2017-04-26       Impact factor: 14.136

10.  Statistical Shape Analysis of Ascending Thoracic Aortic Aneurysm: Correlation between Shape and Biomechanical Descriptors.

Authors:  Federica Cosentino; Giuseppe M Raffa; Giovanni Gentile; Valentina Agnese; Diego Bellavia; Michele Pilato; Salvatore Pasta
Journal:  J Pers Med       Date:  2020-04-22
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  4 in total

Review 1.  Machine Learning for Cardiovascular Biomechanics Modeling: Challenges and Beyond.

Authors:  Amirhossein Arzani; Jian-Xun Wang; Michael S Sacks; Shawn C Shadden
Journal:  Ann Biomed Eng       Date:  2022-04-20       Impact factor: 3.934

2.  Challenges in dynamic mode decomposition.

Authors:  Ziyou Wu; Steven L Brunton; Shai Revzen
Journal:  J R Soc Interface       Date:  2021-12-22       Impact factor: 4.118

3.  Physics-Informed Neural Networks for Brain Hemodynamic Predictions Using Medical Imaging.

Authors:  Mohammad Sarabian; Hessam Babaee; Kaveh Laksari
Journal:  IEEE Trans Med Imaging       Date:  2022-08-31       Impact factor: 11.037

4.  Computational Fluid Dynamics (CFD) For Predicting Pathological Changes In The Aorta: Is It Ready For Clinical Use?

Authors:  Dominik Obrist; Hendrik von Tengg-Kobligk
Journal:  Arq Bras Cardiol       Date:  2022-02       Impact factor: 2.000

  4 in total

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