Literature DB >> 34932929

Challenges in dynamic mode decomposition.

Ziyou Wu1, Steven L Brunton2, Shai Revzen1.   

Abstract

Dynamic mode decomposition (DMD) is a powerful tool for extracting spatial and temporal patterns from multi-dimensional time series, and it has been used successfully in a wide range of fields, including fluid mechanics, robotics and neuroscience. Two of the main challenges remaining in DMD research are noise sensitivity and issues related to Krylov space closure when modelling nonlinear systems. Here, we investigate the combination of noise and nonlinearity in a controlled setting, by studying a class of systems with linear latent dynamics which are observed via multinomial observables. Our numerical models include system and measurement noise. We explore the influences of dataset metrics, the spectrum of the latent dynamics, the normality of the system matrix and the geometry of the dynamics. Our results show that even for these very mildly nonlinear conditions, DMD methods often fail to recover the spectrum and can have poor predictive ability. Our work is motivated by our experience modelling multilegged robot data, where we have encountered great difficulty in reconstructing time series for oscillatory systems with intermediate transients, which decay only slightly faster than a period.

Entities:  

Keywords:  dynamic mode decomposition dynamical systems; locomotion

Year:  2021        PMID: 34932929      PMCID: PMC8692036          DOI: 10.1098/rsif.2021.0686

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  20 in total

1.  Variational Approach to Molecular Kinetics.

Authors:  Feliks Nüske; Bettina G Keller; Guillermo Pérez-Hernández; Antonia S J S Mey; Frank Noé
Journal:  J Chem Theory Comput       Date:  2014-03-06       Impact factor: 6.006

2.  Variational tensor approach for approximating the rare-event kinetics of macromolecular systems.

Authors:  Feliks Nüske; Reinhold Schneider; Francesca Vitalini; Frank Noé
Journal:  J Chem Phys       Date:  2016-02-07       Impact factor: 3.488

3.  Hamiltonian Systems and Transformation in Hilbert Space.

Authors:  B O Koopman
Journal:  Proc Natl Acad Sci U S A       Date:  1931-05       Impact factor: 11.205

4.  Extended dynamic mode decomposition with dictionary learning: A data-driven adaptive spectral decomposition of the Koopman operator.

Authors:  Qianxiao Li; Felix Dietrich; Erik M Bollt; Ioannis G Kevrekidis
Journal:  Chaos       Date:  2017-10       Impact factor: 3.642

5.  Subspace dynamic mode decomposition for stochastic Koopman analysis.

Authors:  Naoya Takeishi; Yoshinobu Kawahara; Takehisa Yairi
Journal:  Phys Rev E       Date:  2017-09-18       Impact factor: 2.529

6.  Discovering dynamic patterns from infectious disease data using dynamic mode decomposition.

Authors:  Joshua L Proctor; Philip A Eckhoff
Journal:  Int Health       Date:  2015-03       Impact factor: 2.473

7.  Koopman Invariant Subspaces and Finite Linear Representations of Nonlinear Dynamical Systems for Control.

Authors:  Steven L Brunton; Bingni W Brunton; Joshua L Proctor; J Nathan Kutz
Journal:  PLoS One       Date:  2016-02-26       Impact factor: 3.240

8.  Chaos as an intermittently forced linear system.

Authors:  Steven L Brunton; Bingni W Brunton; Joshua L Proctor; Eurika Kaiser; J Nathan Kutz
Journal:  Nat Commun       Date:  2017-05-30       Impact factor: 14.919

9.  Extended-Kalman-filter-based dynamic mode decomposition for simultaneous system identification and denoising.

Authors:  Taku Nonomura; Hisaichi Shibata; Ryoji Takaki
Journal:  PLoS One       Date:  2019-02-21       Impact factor: 3.240

10.  Data-driven spectral analysis for coordinative structures in periodic human locomotion.

Authors:  Keisuke Fujii; Naoya Takeishi; Benio Kibushi; Motoki Kouzaki; Yoshinobu Kawahara
Journal:  Sci Rep       Date:  2019-11-14       Impact factor: 4.379

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