Literature DB >> 33558231

A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins.

Robert C Thomson1, Phillip Q Spinks2,3, H Bradley Shaffer2,3.   

Abstract

Living turtles are characterized by extraordinarily low species diversity given their age. The clade's extensive fossil record indicates that climate and biogeography may have played important roles in determining their diversity. We investigated this hypothesis by collecting a molecular dataset for 591 individual turtles that, together, represent 80% of all turtle species, including representatives of all families and 98% of genera, and used it to jointly estimate phylogeny and divergence times. We found that the turtle tree is characterized by relatively constant diversification (speciation minus extinction) punctuated by a single threefold increase. We also found that this shift is temporally and geographically associated with newly emerged continental margins that appeared during the Eocene-Oligocene transition about 30 million years before present. In apparent contrast, the fossil record from this time period contains evidence for a major, but regional, extinction event. These seemingly discordant findings appear to be driven by a common global process: global cooling and drying at the time of the Eocene-Oligocene transition. This climatic shift led to aridification that drove extinctions in important fossil-bearing areas, while simultaneously exposing new continental margin habitat that subsequently allowed for a burst of speciation associated with these newly exploitable ecological opportunities.

Entities:  

Keywords:  GeoSSE; HiSSE; divergence time estimation; global climate change; turtle tree of life

Year:  2021        PMID: 33558231      PMCID: PMC7896334          DOI: 10.1073/pnas.2012215118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

1.  Vicariant origin of malagasy reptiles supports late cretaceous antarctic land bridge.

Authors:  Brice P Noonan; Paul T Chippindale
Journal:  Am Nat       Date:  2006-10-31       Impact factor: 3.926

2.  Evolutionary relationships of marine turtles: A molecular phylogeny based on nuclear and mitochondrial genes.

Authors:  Eugenia Naro-Maciel; Minh Le; Nancy N FitzSimmons; George Amato
Journal:  Mol Phylogenet Evol       Date:  2008-08-12       Impact factor: 4.286

3.  Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles.

Authors:  Robert C Thomson; Andrew M Shedlock; Scott V Edwards; H Bradley Shaffer
Journal:  Mol Phylogenet Evol       Date:  2008-08-12       Impact factor: 4.286

4.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

5.  Macroevolutionary perspectives to environmental change.

Authors:  Fabien L Condamine; Jonathan Rolland; Hélène Morlon
Journal:  Ecol Lett       Date:  2013-01-17       Impact factor: 9.492

6.  Phylogeny and temporal diversification of the New World pond turtles (Emydidae).

Authors:  Phillip Q Spinks; Robert C Thomson; Evan McCartney-Melstad; H Bradley Shaffer
Journal:  Mol Phylogenet Evol       Date:  2016-07-09       Impact factor: 4.286

7.  Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome.

Authors:  C R Primmer; T Borge; J Lindell; G-P Saetre
Journal:  Mol Ecol       Date:  2002-03       Impact factor: 6.185

8.  Extant timetrees are consistent with a myriad of diversification histories.

Authors:  Stilianos Louca; Matthew W Pennell
Journal:  Nature       Date:  2020-04-15       Impact factor: 49.962

9.  Climate change and temperature-dependent sex determination in reptiles.

Authors:  F J Janzen
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-02       Impact factor: 11.205

10.  Molecular phylogeny and divergence of the map turtles (Emydidae: Graptemys).

Authors:  Robert C Thomson; Phillip Q Spinks; H Bradley Shaffer
Journal:  Mol Phylogenet Evol       Date:  2017-12-11       Impact factor: 4.286

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  10 in total

1.  A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins.

Authors:  Robert C Thomson; Phillip Q Spinks; H Bradley Shaffer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 11.205

Review 2.  Sex Chromosomes and Master Sex-Determining Genes in Turtles and Other Reptiles.

Authors:  Dominique Thépot
Journal:  Genes (Basel)       Date:  2021-11-19       Impact factor: 4.096

3.  The Galapagos giant tortoise Chelonoidis phantasticus is not extinct.

Authors:  Evelyn L Jensen; Stephen J Gaughran; Nicole A Fusco; Nikos Poulakakis; Washington Tapia; Christian Sevilla; Jeffreys Málaga; Carol Mariani; James P Gibbs; Adalgisa Caccone
Journal:  Commun Biol       Date:  2022-06-09

4.  Evolutionary history of mental glands in turtles reveals a single origin in an aquatic ancestor and recurrent losses independent of macrohabitat.

Authors:  Alejandro Ibáñez; Uwe Fritz; Markus Auer; Albert Martínez-Silvestre; Peter Praschag; Emilia Załugowicz; Dagmara Podkowa; Maciej Pabijan
Journal:  Sci Rep       Date:  2021-05-17       Impact factor: 4.379

5.  Limitations of Phylogenomic Data Can Drive Inferred Speciation Rate Shifts.

Authors:  Jack M Craig; Sudhir Kumar; S Blair Hedges
Journal:  Mol Biol Evol       Date:  2022-03-02       Impact factor: 16.240

6.  The evolution of reproductive strategies in turtles.

Authors:  Gabriel Jorgewich-Cohen; Rafael S Henrique; Pedro Henrique Dias; Marcelo R Sánchez-Villagra
Journal:  PeerJ       Date:  2022-03-11       Impact factor: 2.984

7.  Gene Regulation during Carapacial Ridge Development of Mauremys reevesii: The Development of Carapacial Ridge, Ribs and Scutes.

Authors:  Jiayu Yang; Yingying Xia; Shaohu Li; Tingting Chen; Jilong Zhang; Zhiyuan Weng; Huiwei Zheng; Minxuan Jin; Chuanhe Bao; Shiping Su; Yangyang Liang; Jun Zhang
Journal:  Genes (Basel)       Date:  2022-09-19       Impact factor: 4.141

8.  Chronology of embryonic and gonadal development in the Reeves' turtle, Mauremys reevesii.

Authors:  Hiroshi Akashi; Manami Kubota; Hibiki Yamamoto; Kaori Miyaoku; Genki Yamagishi; Shinichi Miyagawa
Journal:  Sci Rep       Date:  2022-07-08       Impact factor: 4.996

9.  Effects of Fluctuating Thermal Regimes on Life History Parameters and Body Size of Ophraella communa.

Authors:  Chenchen Zhao; Hongsong Chen; Jianying Guo; Zhongshi Zhou
Journal:  Insects       Date:  2022-09-09       Impact factor: 3.139

10.  ROSIE, a database of reptilian offspring sex ratios and sex-determining mechanisms, beginning with Testudines.

Authors:  Caleb J Krueger; Fredric J Janzen
Journal:  Sci Data       Date:  2022-01-21       Impact factor: 6.444

  10 in total

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