Literature DB >> 32322065

Extant timetrees are consistent with a myriad of diversification histories.

Stilianos Louca1,2, Matthew W Pennell3,4.   

Abstract

Time-calibrated phylogenies of extant species (referred to here as 'extant timetrees') are widely used for estimating diversification dynamics1. However, there has been considerable debate surrounding the reliability of these inferences2-5 and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These 'congruent' scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.

Mesh:

Year:  2020        PMID: 32322065     DOI: 10.1038/s41586-020-2176-1

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  61 in total

1.  A deep-time perspective on the latitudinal diversity gradient.

Authors:  Philip D Mannion
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-15       Impact factor: 11.205

2.  Planktivores as trophic drivers of global coral reef fish diversity patterns.

Authors:  Alexandre C Siqueira; Renato A Morais; David R Bellwood; Peter F Cowman
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

3.  Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms.

Authors:  Gregory W Stull; Xiao-Jian Qu; Caroline Parins-Fukuchi; Ying-Ying Yang; Jun-Bo Yang; Zhi-Yun Yang; Yi Hu; Hong Ma; Pamela S Soltis; Douglas E Soltis; De-Zhu Li; Stephen A Smith; Ting-Shuang Yi
Journal:  Nat Plants       Date:  2021-07-19       Impact factor: 15.793

4.  Heterogeneous relationships between rates of speciation and body size evolution across vertebrate clades.

Authors:  Christopher R Cooney; Gavin H Thomas
Journal:  Nat Ecol Evol       Date:  2020-10-26       Impact factor: 15.460

5.  A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins.

Authors:  Robert C Thomson; Phillip Q Spinks; H Bradley Shaffer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 11.205

6.  Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna.

Authors:  Thomas L P Couvreur; Pierre Sepulchre; Gilles Dauby; Anne Blach-Overgaard; Vincent Deblauwe; Steven Dessein; Vincent Droissart; Oliver J Hardy; David J Harris; Steven B Janssens; Alexandra C Ley; Barbara A Mackinder; Bonaventure Sonké; Marc S M Sosef; Tariq Stévart; Jens-Christian Svenning; Jan J Wieringa; Adama Faye; Alain D Missoup; Krystal A Tolley; Violaine Nicolas; Stéphan Ntie; Frédiéric Fluteau; Cécile Robin; Francois Guillocheau; Doris Barboni
Journal:  Biol Rev Camb Philos Soc       Date:  2020-09-13

Review 7.  Disparities in the analysis of morphological disparity.

Authors:  Thomas Guillerme; Natalie Cooper; Stephen L Brusatte; Katie E Davis; Andrew L Jackson; Sylvain Gerber; Anjali Goswami; Kevin Healy; Melanie J Hopkins; Marc E H Jones; Graeme T Lloyd; Joseph E O'Reilly; Abi Pate; Mark N Puttick; Emily J Rayfield; Erin E Saupe; Emma Sherratt; Graham J Slater; Vera Weisbecker; Gavin H Thomas; Philip C J Donoghue
Journal:  Biol Lett       Date:  2020-07-01       Impact factor: 3.703

8.  Of Traits and Trees: Probabilistic Distances under Continuous Trait Models for Dissecting the Interplay among Phylogeny, Model, and Data.

Authors:  Richard H Adams; Heath Blackmon; Michael DeGiorgio
Journal:  Syst Biol       Date:  2021-06-16       Impact factor: 15.683

9.  Color Polymorphism is a Driver of Diversification in the Lizard Family Lacertidae.

Authors:  Kinsey M Brock; Emily Jane McTavish; Danielle L Edwards
Journal:  Syst Biol       Date:  2021-12-16       Impact factor: 15.683

10.  Unifying Phylogenetic Birth-Death Models in Epidemiology and Macroevolution.

Authors:  Ailene MacPherson; Stilianos Louca; Angela McLaughlin; Jeffrey B Joy; Matthew W Pennell
Journal:  Syst Biol       Date:  2021-12-16       Impact factor: 15.683

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