Literature DB >> 33553641

Characterization of the complete plastid genome of Lysimachia christinae Hance (Primulaceae).

Cai-Yun Zhang1, Hai-Fei Yan2, Feng-Ying Wang3.   

Abstract

Lysimachia christinae Hance is widely distributed in subtropical China at the elevational range from 500-2300 m. The species is an important medicinal herb for treating jaundice, urinary disorders, and the liver. Here, we sequenced and characterized the whole plastid genome of L. christinae. It is 154,810 bp in length, containing two copies of inverted repeat (IR) regions (26,034 bp, each), a large single-copy (LSC) region (84,809 bp), and a small single-copy (SSC) region (17,933 bp). It has 114 genes, of which 80 are protein-coding, 30 are tRNA, and 4 are rRNA genes. The ML tree indicates L. christinae is closely related to Lysimachia congestiflora Hemsl. This genome information can help us better construct a backbone phylogeny of Lysimachia in the future.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Illumina sequencing; Lysimachia; phylogenetic analyses; plastome

Year:  2021        PMID: 33553641      PMCID: PMC7850378          DOI: 10.1080/23802359.2020.1863873

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

3.  Complete chloroplast genome sequence of Lysimachia coreana (Primulaceae).

Authors:  OGyeong Son; Seon Joo Park
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-11-27       Impact factor: 1.514

4.  What explains high plant richness in East Asia? Time and diversification in the tribe Lysimachieae (Primulaceae).

Authors:  Hai-Fei Yan; Cai-Yun Zhang; Arne A Anderberg; Gang Hao; Xue-Jun Ge; John J Wiens
Journal:  New Phytol       Date:  2018-04-17       Impact factor: 10.151

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

7.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

8.  Complete plastome sequence of Lysimachia congestiflora Hemsl. a medicinal and ornamental species in Southern China.

Authors:  Hai-Li Li; Xia-Lan Cheng; Yan Chen; Fei-Li Tan
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-11       Impact factor: 0.658

  8 in total

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