| Literature DB >> 33550766 |
Sevde Hasanoğlu1, Beyza Göncü1, Emrah Yücesan2, Sezen Atasoy3, Yunus Kayalı4, Nur Özten Kandaş5.
Abstract
Background/aim: MicroRNAs (miRNAs) are known up-to-date candidate biomarkers for several diseases. In addition, obtaining miRNA from different body fluids such as serum, plasma, saliva, and urine is relatively easy to handle. Herein we aimed to detect miRNAs as biomarkers for early stage prostate cancer (PC). For this purpose, we used urine and serum samples to detect any significant differences in miRNA profiles between patients and healthy controls. Materials and methods: Total ribonucleic acid (RNA) in urine and serum samples were isolated from eight untreated PC patients, thirty healthy individuals were screened for miRNA profile, and candidate miRNAs were validated. Whole urinary and serum miRNA profile was analyzed using Affymetrix GeneChip miRNA 4.0 Arrays. Candidate miRNAs were investigated by stem-loop reverse transcription- polymerase chain reaction.Entities:
Keywords: Prostate cancer; biomarker; miRNA profiling; microarray
Mesh:
Substances:
Year: 2021 PMID: 33550766 PMCID: PMC8569761 DOI: 10.3906/sag-2010-183
Source DB: PubMed Journal: Turk J Med Sci ISSN: 1300-0144 Impact factor: 0.973
Gleason grading system and PSA levels for patients who have untreated prostate cancer (Gleason score; >7: high grade, 7: intermediate grade, <7: low grade). PSA: prostate-specific antigen.
| Patient | Age | Serum PSA level (ng/mL) | Gleason score |
|---|---|---|---|
| #1 | 52 | 40 | 6 (3+3) |
| #2 | 49 | 6.39 | 6 (3+3) |
| #3 | 60 | 36 | 9 (5+4) |
| #4 | 67 | 7.6 | 7 (4+3) |
| #5 | 72 | 3.3 | 6 (3+3) |
| #6 | 65 | 22.3 | 7 (3+4) |
| #7 | 70 | 15.11 | 9 (4+5) |
| #8 | 61 | 30 | 7 (4+3) |
Transcript ID and fold change of miRNAs in urine and serum specimens of patients and healthy groups. Overlapping miRNAs both for serum and urine specimens are marked as bold. –: downregulated, +: upregulated.
| miR ID | Accession # | Specimens | Fold Change |
|---|---|---|---|
| MIR4532 | MIMAT0019071 | Urine/Serum | +3.99/–2.05 |
| MIR6750 | MIMAT0027400 | Urine/Serum | +2.23/+2.37 |
| MIR4706 | MIMAT0019806 | Urine/Serum | +2.66/–2.72 |
| MIR320A | MIMAT0000510 | Urine/Serum | –4.2/–2.05 |
| MIR744 | MIMAT0004945 | Urine | +6.21 |
| MIR6726 | MIMAT0027353 | Urine | +5.49 |
| MIR4485 | MIMAT0019019 | Urine | +5.34 |
| MIR6813 | MIMAT0027526 | Urine | +5.24 |
| MIR3180–4 | MIMAT0018178 | Urine | +4.33 |
| MIR3197 | MIMAT0015082 | Urine | +4.24 |
| MIR4532 | MIMAT0019071 | Urine | +3.99 |
| MIR4674 | MI0017305 | Urine | +3.57 |
| MIR4449 | MIMAT0018968 | Urine | +3.52 |
| MIR3180–1 | MIMAT0015058 | Urine | +3.39 |
| MIR3663 | MIMAT0018085 | Urine | +3.14 |
| MIR6824 | MIMAT0027548 | Urine | +3.01 |
| MIR885 | MIMAT0004948 | Urine | +2.91 |
| MIR4749 | MIMAT0019885 | Urine | +2.9 |
| MIR6819 | MIMAT0027538 | Urine | +2.84 |
| MIR6798 | MIMAT0027496 | Urine | +2.74 |
| MIR4706 | MIMAT0019806 | Urine | +2.66 |
| MIR3178 | MIMAT0015055 | Urine | +2.6 |
| MIR6075 | MIMAT0023700 | Urine | +2.57 |
| MIR3937 | MIMAT0018352 | Urine | +2.47 |
| MIR1275 | MIMAT0005929 | Urine | +2.42 |
| MIR423 | MIMAT0004748 | Urine | +2.4 |
| MIR6787 | MIMAT0027474 | Urine | +2.4 |
| MIR6845 | MIMAT0027590 | Urine | +2.39 |
| MIR4649 | MIMAT0019711 | Urine | +2.38 |
| MIR6782 | MIMAT0027464 | Urine | +2.37 |
| MIR3648–1 | MI0016048 | Urine | +2.36 |
| MIR4674 | MIMAT0019756 | Urine | +2.32 |
| MIR4758 | MI0017399 | Urine | +2.31 |
| MIR6808 | MIMAT0027516 | Urine | +2.3 |
| MIR6090 | MI0020367 | Urine | +2.3 |
| MIR1909 | MIMAT0007883 | Urine | +2.29 |
| MIR6848 | MIMAT0027596 | Urine | +2.29 |
| MIR378H | MIMAT0018984 | Urine | +2.27 |
| MIR6802 | MIMAT0027504 | Urine | +2.24 |
| MIR6750 | MIMAT0027400 | Urine | +2.23 |
| MIR4466 | MI0016817 | Urine | +2.23 |
| MIR6510 | MIMAT0025476 | Urine | +2.21 |
| MIR6778 | MIMAT0027456 | Urine | +2.2 |
| MIR4750 | MIMAT0019887 | Urine | +2.16 |
| MIR4673 | MIMAT0019755 | Urine | +2.15 |
| MIR7150 | MIMAT0028211 | Urine | +2.14 |
| MIR1224 | MIMAT0005458 | Urine | +2.13 |
| MIR4467 | MIMAT0018994 | Urine | +2.09 |
| MIR7110 | MIMAT0028117 | Urine | +2.09 |
| MIR320E | MI0014234 | Urine | +2.08 |
| MIR4417 | MIMAT0018929 | Urine | +2.05 |
| MIR4274 | MIMAT0016906 | Urine | +2.02 |
| MIR4492 | MIMAT0019027 | Urine | +2.02 |
| MIR4701 | MIMAT0019799 | Urine | –2.08 |
| MIR6812 | MIMAT0027524 | Urine | –2.12 |
| MIR6124 | MIMAT0024597 | Urine | –2.13 |
| MIR3613 | MIMAT0017990 | Urine | –2.15 |
| MIR4440 | MIMAT0018958 | Urine | –2.16 |
| MIR575 | MIMAT0003240 | Urine | –2.28 |
| MIR6840 | MIMAT0027583 | Urine | –2.31 |
| MIR6716 | MIMAT0025845 | Urine | –2.52 |
| MIR8071–1 | MIMAT0030998 | Urine | –2.76 |
| MIR320C1 | MIMAT0005793 | Urine | –2.99 |
| MIR320D1 | MIMAT0006764 | Urine | –3.19 |
| MIR6790 | MIMAT0027480 | Urine | –3.58 |
| MIR3188 | MIMAT0015070 | Urine | –3.63 |
| MIR320A | MIMAT0000510 | Urine | –4.2 |
| MIR486–1 | MIMAT0002177 | Serum | +11.02 |
| MIR149 | MIMAT0004609 | Serum | +5.57 |
| MIR1237 | MIMAT0022946 | Serum | +4.94 |
| MIR4687 | MIMAT0019775 | Serum | +4.84 |
| MIR4463 | MIMAT0018987 | Serum | +4.38 |
| MIR4529 | MIMAT0019068 | Serum | +3.93 |
| MIR4508 | MIMAT0019045 | Serum | +3.28 |
| MIR4763 | MIMAT0019913 | Serum | +3.15 |
| MIR7706 | MI0025242 | Serum | +2.82 |
| MIR6756 | MIMAT0027412 | Serum | +2.8 |
| MIR6776 | MI0022621 | Serum | +2.72 |
| MIR6715A | MIMAT0025841 | Serum | +2.55 |
| MIR6869 | MIMAT0027638 | Serum | +2.55 |
| MIR3196 | MIMAT0015080 | Serum | +2.48 |
| MIR409 | MIMAT0001639 | Serum | +2.43 |
| MIR6750 | MIMAT0027400 | Serum | +2.37 |
| MIR4728 | MIMAT0019849 | Serum | +2.13 |
| MIR4700 | MIMAT0019797 | Serum | +2.09 |
| MIR6819 | MIMAT0027539 | Serum | +2.06 |
| MIR6803 | MIMAT0027506 | Serum | – 2.01 |
| MIR4785 | MIMAT0019949 | Serum | –2.03 |
| MIR320A | MIMAT0000510 | Serum | –2.05 |
| MIR4532 | MIMAT0019071 | Serum | –2.05 |
| MIR4490 | MI0016852 | Serum | –2.06 |
| MIR1180 | MIMAT0026735 | Serum | –2.08 |
| MIR3613 | MIMAT0017991 | Serum | – 2.09 |
| MIR6850 | MIMAT0027600 | Serum | –2.22 |
| MIR6780B | MIMAT0027572 | Serum | –2.28 |
| MIR4668 | MIMAT0019745 | Serum | –2.45 |
| MIR1908 | MIMAT0007881 | Serum | –2.48 |
| MIR1228 | MIMAT0005582 | Serum | –2.52 |
| MIR940 | MIMAT0004983 | Serum | –2.65 |
| MIR4706 | MIMAT0019806 | Serum | –2.72 |
| MIR668 | MIMAT0026636 | Serum | –2.95 |
| MIR602 | MIMAT0003270 | Serum | –3.00 |
| MIR4497 | MIMAT0019032 | Serum | –3.19 |
| MIR4707 | MIMAT0019807 | Serum | –3.96 |
| MIR6511B1 | MIMAT0025847 | Serum | –5.07 |
| MIR6126 | MIMAT0024599 | Serum | –18.39 |
| MIR4484 | MIMAT0019018 | Serum | –23.97 |