Literature DB >> 33547415

Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence.

Peter M Maloca1,2,3,4, Philipp L Müller5,6, Aaron Y Lee7,8,9, Adnan Tufail5, Konstantinos Balaskas5,10, Stephanie Niklaus11, Pascal Kaiser12, Susanne Suter12,13, Javier Zarranz-Ventura14, Catherine Egan5, Hendrik P N Scholl15,16, Tobias K Schnitzer11, Thomas Singer11, Pascal W Hasler17,16, Nora Denk16,11.   

Abstract

Machine learning has greatly facilitated the analysis of medical data, while the internal operations usually remain intransparent. To better comprehend these opaque procedures, a convolutional neural network for optical coherence tomography image segmentation was enhanced with a Traceable Relevance Explainability (T-REX) technique. The proposed application was based on three components: ground truth generation by multiple graders, calculation of Hamming distances among graders and the machine learning algorithm, as well as a smart data visualization ('neural recording'). An overall average variability of 1.75% between the human graders and the algorithm was found, slightly minor to 2.02% among human graders. The ambiguity in ground truth had noteworthy impact on machine learning results, which could be visualized. The convolutional neural network balanced between graders and allowed for modifiable predictions dependent on the compartment. Using the proposed T-REX setup, machine learning processes could be rendered more transparent and understandable, possibly leading to optimized applications.

Entities:  

Year:  2021        PMID: 33547415      PMCID: PMC7864998          DOI: 10.1038/s42003-021-01697-y

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  63 in total

1.  Can we open the black box of AI?

Authors:  Davide Castelvecchi
Journal:  Nature       Date:  2016-10-06       Impact factor: 49.962

2.  Artificial intelligence-assisted interpretation of bone age radiographs improves accuracy and decreases variability.

Authors:  Shahein H Tajmir; Hyunkwang Lee; Randheer Shailam; Heather I Gale; Jie C Nguyen; Sjirk J Westra; Ruth Lim; Sehyo Yune; Michael S Gee; Synho Do
Journal:  Skeletal Radiol       Date:  2018-08-01       Impact factor: 2.199

3.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

4.  Cortical Circuit Dynamics Are Homeostatically Tuned to Criticality In Vivo.

Authors:  Zhengyu Ma; Gina G Turrigiano; Ralf Wessel; Keith B Hengen
Journal:  Neuron       Date:  2019-10-07       Impact factor: 17.173

5.  Exact and Asymptotic Weighted Logrank Tests for Interval Censored Data: The interval R package.

Authors:  Michael P Fay; Pamela A Shaw
Journal:  J Stat Softw       Date:  2010-08       Impact factor: 6.440

6.  Guidelines for Inclusion of Patient-Reported Outcomes in Clinical Trial Protocols: The SPIRIT-PRO Extension.

Authors:  Melanie Calvert; Derek Kyte; Rebecca Mercieca-Bebber; Anita Slade; An-Wen Chan; Madeleine T King; Amanda Hunn; Andrew Bottomley; Antoine Regnault; An-Wen Chan; Carolyn Ells; Daniel O'Connor; Dennis Revicki; Donald Patrick; Doug Altman; Ethan Basch; Galina Velikova; Gary Price; Heather Draper; Jane Blazeby; Jane Scott; Joanna Coast; Josephine Norquist; Julia Brown; Kirstie Haywood; Laura Lee Johnson; Lisa Campbell; Lori Frank; Maria von Hildebrand; Michael Brundage; Michael Palmer; Paul Kluetz; Richard Stephens; Robert M Golub; Sandra Mitchell; Trish Groves
Journal:  JAMA       Date:  2018-02-06       Impact factor: 56.272

Review 7.  Reporting and methods in clinical prediction research: a systematic review.

Authors:  Walter Bouwmeester; Nicolaas P A Zuithoff; Susan Mallett; Mirjam I Geerlings; Yvonne Vergouwe; Ewout W Steyerberg; Douglas G Altman; Karel G M Moons
Journal:  PLoS Med       Date:  2012-05-22       Impact factor: 11.069

8.  Feasibility and patient acceptability of a novel artificial intelligence-based screening model for diabetic retinopathy at endocrinology outpatient services: a pilot study.

Authors:  Stuart Keel; Pei Ying Lee; Jane Scheetz; Zhixi Li; Mark A Kotowicz; Richard J MacIsaac; Mingguang He
Journal:  Sci Rep       Date:  2018-03-12       Impact factor: 4.379

9.  Automatic choroidal segmentation in OCT images using supervised deep learning methods.

Authors:  Jason Kugelman; David Alonso-Caneiro; Scott A Read; Jared Hamwood; Stephen J Vincent; Fred K Chen; Michael J Collins
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

Review 10.  Causability and explainability of artificial intelligence in medicine.

Authors:  Andreas Holzinger; Georg Langs; Helmut Denk; Kurt Zatloukal; Heimo Müller
Journal:  Wiley Interdiscip Rev Data Min Knowl Discov       Date:  2019-04-02
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  4 in total

1.  Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence.

Authors:  Peter M Maloca; Philipp L Müller; Aaron Y Lee; Adnan Tufail; Konstantinos Balaskas; Stephanie Niklaus; Pascal Kaiser; Susanne Suter; Javier Zarranz-Ventura; Catherine Egan; Hendrik P N Scholl; Tobias K Schnitzer; Thomas Singer; Pascal W Hasler; Nora Denk
Journal:  Commun Biol       Date:  2021-02-05

2.  Uncovering of intraspecies macular heterogeneity in cynomolgus monkeys using hybrid machine learning optical coherence tomography image segmentation.

Authors:  Peter M Maloca; Christine Seeger; Helen Booler; Philippe Valmaggia; Ken Kawamoto; Qayim Kaba; Nadja Inglin; Konstantinos Balaskas; Catherine Egan; Adnan Tufail; Hendrik P N Scholl; Pascal W Hasler; Nora Denk
Journal:  Sci Rep       Date:  2021-10-19       Impact factor: 4.379

3.  Cynomolgus monkey's choroid reference database derived from hybrid deep learning optical coherence tomography segmentation.

Authors:  Peter M Maloca; Christian Freichel; Christof Hänsli; Philippe Valmaggia; Philipp L Müller; Sandrine Zweifel; Christine Seeger; Nadja Inglin; Hendrik P N Scholl; Nora Denk
Journal:  Sci Rep       Date:  2022-08-02       Impact factor: 4.996

4.  Volumetric subfield analysis of cynomolgus monkey's choroid derived from hybrid machine learning optical coherence tomography segmentation.

Authors:  Peter M Maloca; Philippe Valmaggia; Theresa Hartmann; Marlene Juedes; Pascal W Hasler; Hendrik P N Scholl; Nora Denk
Journal:  PLoS One       Date:  2022-09-23       Impact factor: 3.752

  4 in total

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