Literature DB >> 33547323

Rapid electrochemical detection of coronavirus SARS-CoV-2.

Thanyarat Chaibun1, Jiratchaya Puenpa2, Tatchanun Ngamdee3, Nimaradee Boonapatcharoen4, Pornpat Athamanolap1, Anthony Peter O'Mullane5, Sompong Vongpunsawad2, Yong Poovorawan2, Su Yin Lee6,7, Benchaporn Lertanantawong8.   

Abstract

Coronavirus disease 2019 (COVID-19) is a highly contagious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Diagnosis of COVID-19 depends on quantitative reverse transcription PCR (qRT-PCR), which is time-consuming and requires expensive instrumentation. Here, we report an ultrasensitive electrochemical biosensor based on isothermal rolling circle amplification (RCA) for rapid detection of SARS-CoV-2. The assay involves the hybridization of the RCA amplicons with probes that were functionalized with redox active labels that are detectable by an electrochemical biosensor. The one-step sandwich hybridization assay could detect as low as 1 copy/μL of N and S genes, in less than 2 h. Sensor evaluation with 106 clinical samples, including 41 SARS-CoV-2 positive and 9 samples positive for other respiratory viruses, gave a 100% concordance result with qRT-PCR, with complete correlation between the biosensor current signals and quantitation cycle (Cq) values. In summary, this biosensor could be used as an on-site, real-time diagnostic test for COVID-19.

Entities:  

Year:  2021        PMID: 33547323      PMCID: PMC7864991          DOI: 10.1038/s41467-021-21121-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  44 in total

1.  What Is COVID-19?

Authors:  W Joost Wiersinga; Hallie C Prescott
Journal:  JAMA       Date:  2020-07-10       Impact factor: 56.272

2.  Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens.

Authors:  David Kim; James Quinn; Benjamin Pinsky; Nigam H Shah; Ian Brown
Journal:  JAMA       Date:  2020-05-26       Impact factor: 56.272

3.  Rapid and sensitive detection of severe acute respiratory syndrome coronavirus by rolling circle amplification.

Authors:  Bin Wang; Simon J Potter; Yiguang Lin; Anthony L Cunningham; Dominic E Dwyer; Yuelong Su; Xuejun Ma; Yunde Hou; Nitin K Saksena
Journal:  J Clin Microbiol       Date:  2005-05       Impact factor: 5.948

4.  Clinical validation of a Cas13-based assay for the detection of SARS-CoV-2 RNA.

Authors:  Maturada Patchsung; Krittapas Jantarug; Archiraya Pattama; Kanokpol Aphicho; Surased Suraritdechachai; Piyachat Meesawat; Khomkrit Sappakhaw; Nattawat Leelahakorn; Theerawat Ruenkam; Thanakrit Wongsatit; Niracha Athipanyasilp; Bhumrapee Eiamthong; Benya Lakkanasirorat; Thitima Phoodokmai; Nootaree Niljianskul; Danaya Pakotiprapha; Sittinan Chanarat; Aimorn Homchan; Ruchanok Tinikul; Philaiwarong Kamutira; Kochakorn Phiwkaow; Sahachat Soithongcharoen; Chadaporn Kantiwiriyawanitch; Vinutsada Pongsupasa; Duangthip Trisrivirat; Juthamas Jaroensuk; Thanyaporn Wongnate; Somchart Maenpuen; Pimchai Chaiyen; Sirichai Kamnerdnakta; Jirawat Swangsri; Suebwong Chuthapisith; Yongyut Sirivatanauksorn; Chutikarn Chaimayo; Ruengpung Sutthent; Wannee Kantakamalakul; Julia Joung; Alim Ladha; Xin Jin; Jonathan S Gootenberg; Omar O Abudayyeh; Feng Zhang; Navin Horthongkham; Chayasith Uttamapinant
Journal:  Nat Biomed Eng       Date:  2020-08-26       Impact factor: 25.671

5.  Molecular Diagnosis of COVID-19: Challenges and Research Needs.

Authors:  Wei Feng; Ashley M Newbigging; Connie Le; Bo Pang; Hanyong Peng; Yiren Cao; Jinjun Wu; Ghulam Abbas; Jin Song; Dian-Bing Wang; Mengmeng Cui; Jeffrey Tao; D Lorne Tyrrell; Xian-En Zhang; Hongquan Zhang; X Chris Le
Journal:  Anal Chem       Date:  2020-07-09       Impact factor: 6.986

Review 6.  A High-Throughput, Multi-Index Isothermal Amplification Platform for Rapid Detection of 19 Types of Common Respiratory Viruses Including SARS-CoV-2.

Authors:  Wanli Xing; Yingying Liu; Huili Wang; Shanglin Li; Yongping Lin; Lei Chen; Yan Zhao; Shuang Chao; Xiaolan Huang; Shaolin Ge; Tao Deng; Tian Zhao; Baolian Li; Hanbo Wang; Lei Wang; Yunpeng Song; Ronghua Jin; Jianxing He; Xiuying Zhao; Peng Liu; Weimin Li; Jing Cheng
Journal:  Engineering (Beijing)       Date:  2020-09-05       Impact factor: 7.553

7.  US CDC Real-Time Reverse Transcription PCR Panel for Detection of Severe Acute Respiratory Syndrome Coronavirus 2.

Authors:  Xiaoyan Lu; Lijuan Wang; Senthilkumar K Sakthivel; Brett Whitaker; Janna Murray; Shifaq Kamili; Brian Lynch; Lakshmi Malapati; Stephen A Burke; Jennifer Harcourt; Azaibi Tamin; Natalie J Thornburg; Julie M Villanueva; Stephen Lindstrom
Journal:  Emerg Infect Dis       Date:  2020-05-15       Impact factor: 6.883

8.  DNA nanoscaffold-based SARS-CoV-2 detection for COVID-19 diagnosis.

Authors:  Jin Jiao; Chengjie Duan; Lan Xue; Yunfei Liu; Weihao Sun; Yang Xiang
Journal:  Biosens Bioelectron       Date:  2020-07-29       Impact factor: 10.618

9.  Development of a reverse transcription-loop-mediated isothermal amplification as a rapid early-detection method for novel SARS-CoV-2.

Authors:  Yun Hee Baek; Jihye Um; Khristine Joy C Antigua; Ji-Hyun Park; Yeonjae Kim; Sol Oh; Young-Il Kim; Won-Suk Choi; Seong Gyu Kim; Ju Hwan Jeong; Bum Sik Chin; Halcyon Dawn G Nicolas; Ji-Young Ahn; Kyeong Seob Shin; Young Ki Choi; Jun-Sun Park; Min-Suk Song
Journal:  Emerg Microbes Infect       Date:  2020-12       Impact factor: 7.163

10.  CRISPR-Cas12-based detection of SARS-CoV-2.

Authors:  James P Broughton; Xianding Deng; Guixia Yu; Clare L Fasching; Venice Servellita; Jasmeet Singh; Xin Miao; Jessica A Streithorst; Andrea Granados; Alicia Sotomayor-Gonzalez; Kelsey Zorn; Allan Gopez; Elaine Hsu; Wei Gu; Steve Miller; Chao-Yang Pan; Hugo Guevara; Debra A Wadford; Janice S Chen; Charles Y Chiu
Journal:  Nat Biotechnol       Date:  2020-04-16       Impact factor: 68.164

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  68 in total

1.  SenSARS: A Low-Cost Portable Electrochemical System for Ultra-Sensitive, Near Real-Time, Diagnostics of SARS-CoV-2 Infections.

Authors:  Sammy A Perdomo; Viviana Ortega; Andres Jaramillo-Botero; Nelson Mancilla; Jose Hernando Mosquera-DeLaCruz; Drochss Pettry Valencia; Mauricio Quimbaya; Juan David Contreras; Gabriel Esteban Velez; Oscar A Loaiza; Adriana Gomez; Jhonattan de la Roche
Journal:  IEEE Trans Instrum Meas       Date:  2021-10-08       Impact factor: 4.016

2.  Portable Tools for COVID-19 Point-of-Care Detection: A Review.

Authors:  Elga F Saki; Samuel A Setiawan; Dedy H B Wicaksono
Journal:  IEEE Sens J       Date:  2021-09-07       Impact factor: 3.301

3.  Molecular Characterization of Increased Amplicon Lengths in SARS-CoV-2 Reverse Transcription Loop-Mediated Isothermal Amplification Assays.

Authors:  Scott W Tighe; Andrew F Hayden; Marcy L Kuentzel; Korin M Eckstrom; Jonathan Foox; Daniel L Vellone; Kristiaan H Finstad; Pheobe K Laaguiby; Jessica J Hoffman; Sridar V Chittur
Journal:  J Biomol Tech       Date:  2021-09

4.  Nanoparticle-assisted detection of nucleic acids in a polymeric nanopore with a large pore size.

Authors:  Youwen Zhang; Xiaohan Chen; Ceming Wang; Hsueh-Chia Chang; Xiyun Guan
Journal:  Biosens Bioelectron       Date:  2021-10-08       Impact factor: 10.618

Review 5.  Science's Response to CoVID-19.

Authors:  Marcus J C Long; Yimon Aye
Journal:  ChemMedChem       Date:  2021-06-22       Impact factor: 3.540

6.  Unveiling the Potential Role of Nanozymes in Combating the COVID-19 Outbreak.

Authors:  Jafar Ali; Saira Naveed Elahi; Asghar Ali; Hassan Waseem; Rameesha Abid; Mohamed M Mohamed
Journal:  Nanomaterials (Basel)       Date:  2021-05-18       Impact factor: 5.076

7.  Harnessing recombinase polymerase amplification for rapid multi-gene detection of SARS-CoV-2 in resource-limited settings.

Authors:  Dounia Cherkaoui; Da Huang; Benjamin S Miller; Valérian Turbé; Rachel A McKendry
Journal:  Biosens Bioelectron       Date:  2021-05-14       Impact factor: 10.618

8.  Point-of-Care PCR Assays for COVID-19 Detection.

Authors:  Niharika Gupta; Shine Augustine; Tarun Narayan; Alan O'Riordan; Asmita Das; D Kumar; John H T Luong; Bansi D Malhotra
Journal:  Biosensors (Basel)       Date:  2021-05-01

Review 9.  Recent advancements in the measurement of pathogenic airborne viruses.

Authors:  Jyoti Bhardwaj; Seongkyeol Hong; Junbeom Jang; Chang-Ho Han; Jaegil Lee; Jaesung Jang
Journal:  J Hazard Mater       Date:  2021-07-05       Impact factor: 10.588

10.  PCR-assisted impedimetric biosensor for colibactin-encoding pks genomic island detection in E. coli samples.

Authors:  Nadja E Solis-Marcano; Myreisa Morales-Cruz; Gabriela Vega-Hernández; Ramón Gómez-Moreno; Claudia Binder; Abel Baerga-Ortiz; Craig Priest; Carlos R Cabrera
Journal:  Anal Bioanal Chem       Date:  2021-05-27       Impact factor: 4.142

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