Literature DB >> 15872263

Rapid and sensitive detection of severe acute respiratory syndrome coronavirus by rolling circle amplification.

Bin Wang1, Simon J Potter, Yiguang Lin, Anthony L Cunningham, Dominic E Dwyer, Yuelong Su, Xuejun Ma, Yunde Hou, Nitin K Saksena.   

Abstract

The severe acute respiratory syndrome (SARS) epidemic of 2003 was responsible for 774 deaths and caused significant economic damage worldwide. Since July 2003, a number of SARS cases have occurred in China, raising the possibility of future epidemics. We describe here a rapid, sensitive, and highly efficient assay for the detection of SARS coronavirus (SARS-CoV) in cultured material and a small number (n = 7) of clinical samples. Using rolling circle amplification (RCA), we were able to achieve sensitive detection levels of SARS-CoV RNA in both solid and liquid phases. The main advantage of RCA is that it can be performed under isothermal conditions with minimal reagents and avoids the generation of false-positive results, a problem that is frequently encountered in PCR-based assays. Furthermore, the RCA technology provides a faster, more sensitive, and economical option to currently available PCR-based methods.

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Year:  2005        PMID: 15872263      PMCID: PMC1153787          DOI: 10.1128/JCM.43.5.2339-2344.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  22 in total

1.  RNA-templated DNA ligation for transcript analysis.

Authors:  M Nilsson; D O Antson; G Barbany; U Landegren
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

2.  Ramification amplification: a novel isothermal DNA amplification method.

Authors:  D Y Zhang; M Brandwein; T Hsuih; H B Li
Journal:  Mol Diagn       Date:  2001-06

3.  Profile of specific antibodies to the SARS-associated coronavirus.

Authors:  Gang Li; Xuejuan Chen; Anlong Xu
Journal:  N Engl J Med       Date:  2003-07-31       Impact factor: 91.245

4.  Identification of a novel coronavirus in patients with severe acute respiratory syndrome.

Authors:  Christian Drosten; Stephan Günther; Wolfgang Preiser; Sylvie van der Werf; Hans-Reinhard Brodt; Stephan Becker; Holger Rabenau; Marcus Panning; Larissa Kolesnikova; Ron A M Fouchier; Annemarie Berger; Ana-Maria Burguière; Jindrich Cinatl; Markus Eickmann; Nicolas Escriou; Klaus Grywna; Stefanie Kramme; Jean-Claude Manuguerra; Stefanie Müller; Volker Rickerts; Martin Stürmer; Simon Vieth; Hans-Dieter Klenk; Albert D M E Osterhaus; Herbert Schmitz; Hans Wilhelm Doerr
Journal:  N Engl J Med       Date:  2003-04-10       Impact factor: 91.245

5.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification.

Authors:  P M Lizardi; X Huang; Z Zhu; P Bray-Ward; D C Thomas; D C Ward
Journal:  Nat Genet       Date:  1998-07       Impact factor: 38.330

6.  Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D.

Authors:  J Tong; W Cao; F Barany
Journal:  Nucleic Acids Res       Date:  1999-02-01       Impact factor: 16.971

7.  Evaluation of reverse transcription-PCR assays for rapid diagnosis of severe acute respiratory syndrome associated with a novel coronavirus.

Authors:  W C Yam; K H Chan; L L M Poon; Y Guan; K Y Yuen; W H Seto; J S M Peiris
Journal:  J Clin Microbiol       Date:  2003-10       Impact factor: 5.948

8.  Coronavirus as a possible cause of severe acute respiratory syndrome.

Authors:  J S M Peiris; S T Lai; L L M Poon; Y Guan; L Y C Yam; W Lim; J Nicholls; W K S Yee; W W Yan; M T Cheung; V C C Cheng; K H Chan; D N C Tsang; R W H Yung; T K Ng; K Y Yuen
Journal:  Lancet       Date:  2003-04-19       Impact factor: 79.321

9.  Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study.

Authors:  J S M Peiris; C M Chu; V C C Cheng; K S Chan; I F N Hung; L L M Poon; K I Law; B S F Tang; T Y W Hon; C S Chan; K H Chan; J S C Ng; B J Zheng; W L Ng; R W M Lai; Y Guan; K Y Yuen
Journal:  Lancet       Date:  2003-05-24       Impact factor: 79.321

10.  Newly discovered coronavirus as the primary cause of severe acute respiratory syndrome.

Authors:  Thijs Kuiken; Ron A M Fouchier; Martin Schutten; Guus F Rimmelzwaan; Geert van Amerongen; Debby van Riel; Jon D Laman; Ton de Jong; Gerard van Doornum; Wilina Lim; Ai Ee Ling; Paul K S Chan; John S Tam; Maria C Zambon; Robin Gopal; Christian Drosten; Sylvie van der Werf; Nicolas Escriou; Jean-Claude Manuguerra; Klaus Stöhr; J S Malik Peiris; Albert D M E Osterhaus
Journal:  Lancet       Date:  2003-07-26       Impact factor: 79.321

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  37 in total

1.  Practical method for detection and identification of Candida, Aspergillus, and Scedosporium spp. by use of rolling-circle amplification.

Authors:  Xiaoyong Zhou; Fanrong Kong; Tania C Sorrell; Hui Wang; Yiqun Duan; Sharon C A Chen
Journal:  J Clin Microbiol       Date:  2008-05-21       Impact factor: 5.948

2.  Detection of severe acute respiratory syndrome (SARS) coronavirus nucleocapsid protein in human serum using a localized surface plasmon coupled fluorescence fiber-optic biosensor.

Authors:  Jason C Huang; Ying-Feng Chang; Kuan-Hsuan Chen; Li-Chen Su; Chun-Wei Lee; Chii-Chang Chen; Yi-Ming Arthur Chen; Chien Chou
Journal:  Biosens Bioelectron       Date:  2009-07-17       Impact factor: 10.618

3.  Rapid identification of Pseudallescheria and Scedosporium strains by using rolling circle amplification.

Authors:  Michaela Lackner; Mohammad Javad Najafzadeh; Jiufeng Sun; Qiaoyun Lu; G Sybren de Hoog
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

4.  Rapid identification and differentiation of Trichophyton species, based on sequence polymorphisms of the ribosomal internal transcribed spacer regions, by rolling-circle amplification.

Authors:  Fanrong Kong; Zhongsheng Tong; Xiaoyou Chen; Tania Sorrell; Bin Wang; Qixuan Wu; David Ellis; Sharon Chen
Journal:  J Clin Microbiol       Date:  2008-01-30       Impact factor: 5.948

Review 5.  Rolling circle amplification as isothermal gene amplification in molecular diagnostics.

Authors:  Nam-In Goo; Dong-Eun Kim
Journal:  Biochip J       Date:  2016-07-29       Impact factor: 3.494

6.  Synthetic long oligonucleotides to generate artificial templates for use as positive controls in molecular assays: drug resistance mutations in influenza virus as an example.

Authors:  Bin Wang; Megan C Steain; Dominic E Dwyer; Anthony L Cunningham; Nitin K Saksena
Journal:  Virol J       Date:  2011-08-16       Impact factor: 4.099

7.  A simple and rapid approach for screening of SARS-coronavirus genotypes: an evaluation study.

Authors:  Grace T Y Chung; Rossa W K Chiu; Jo L K Cheung; Yongjie Jin; Stephen S C Chim; Paul K S Chan; Y M Dennis Lo
Journal:  BMC Infect Dis       Date:  2005-10-18       Impact factor: 3.090

8.  Using patient-collected clinical samples and sera to detect and quantify the severe acute respiratory syndrome coronavirus (SARS-CoV).

Authors:  Zhongping He; Hui Zhuang; Chunhui Zhao; Qingming Dong; Guoai Peng; Dominic E Dwyer
Journal:  Virol J       Date:  2007-03-27       Impact factor: 4.099

9.  Rapid detection of ERG11 gene mutations in clinical Candida albicans isolates with reduced susceptibility to fluconazole by rolling circle amplification and DNA sequencing.

Authors:  Huiping Wang; Fanrong Kong; Tania C Sorrell; Bin Wang; Paul McNicholas; Namfon Pantarat; David Ellis; Meng Xiao; Fred Widmer; Sharon Ca Chen
Journal:  BMC Microbiol       Date:  2009-08-14       Impact factor: 3.605

10.  Controlled Microwave Heating Accelerates Rolling Circle Amplification.

Authors:  Takeo Yoshimura; Takamasa Suzuki; Shigeru Mineki; Shokichi Ohuchi
Journal:  PLoS One       Date:  2015-09-08       Impact factor: 3.240

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