Literature DB >> 33547281

Structure and binding properties of Pangolin-CoV spike glycoprotein inform the evolution of SARS-CoV-2.

Antoni G Wrobel1, Donald J Benton2, Pengqi Xu3,4, Lesley J Calder5, Annabel Borg6, Chloë Roustan6, Stephen R Martin3, Peter B Rosenthal5, John J Skehel3, Steven J Gamblin7.   

Abstract

Coronaviruses of bats and pangolins have been implicated in the origin and evolution of the pandemic SARS-CoV-2. We show that spikes from Guangdong Pangolin-CoVs, closely related to SARS-CoV-2, bind strongly to human and pangolin ACE2 receptors. We also report the cryo-EM structure of a Pangolin-CoV spike protein and show it adopts a fully-closed conformation and that, aside from the Receptor-Binding Domain, it resembles the spike of a bat coronavirus RaTG13 more than that of SARS-CoV-2.

Entities:  

Year:  2021        PMID： 33547281      PMCID： PMC7864994          DOI： 10.1038/s41467-021-21006-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN： 2041-1723            Impact factor:   14.919


  29 in total

1.  MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.

Authors:  Shawn Q Zheng; Eugene Palovcak; Jean-Paul Armache; Kliment A Verba; Yifan Cheng; David A Agard
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

2.  One number does not fit all: mapping local variations in resolution in cryo-EM reconstructions.

Authors:  Giovanni Cardone; J Bernard Heymann; Alasdair C Steven
Journal:  J Struct Biol       Date:  2013-08-14       Impact factor: 2.867

Review 3.  Structure, Function, and Evolution of Coronavirus Spike Proteins.

Authors:  Fang Li
Journal:  Annu Rev Virol       Date:  2016-08-25       Impact factor: 10.431

4.  Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins.

Authors:  Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Marcus Ho-Hin Shum; Jia-Fu Jiang; Yi-Gang Tong; Hua-Chen Zhu; Yong-Xia Shi; Xue-Bing Ni; Yun-Shi Liao; Wen-Juan Li; Bao-Gui Jiang; Wei Wei; Ting-Ting Yuan; Kui Zheng; Xiao-Ming Cui; Jie Li; Guang-Qian Pei; Xin Qiang; William Yiu-Man Cheung; Lian-Feng Li; Fang-Fang Sun; Si Qin; Ji-Cheng Huang; Gabriel M Leung; Edward C Holmes; Yan-Ling Hu; Yi Guan; Wu-Chun Cao
Journal:  Nature       Date:  2020-03-26       Impact factor: 49.962

5.  Optimizing high-yield production of SARS-CoV-2 soluble spike trimers for serology assays.

Authors:  Dominic Esposito; Jennifer Mehalko; Matthew Drew; Kelly Snead; Vanessa Wall; Troy Taylor; Peter Frank; John-Paul Denson; Min Hong; Gulcin Gulten; Kaitlyn Sadtler; Simon Messing; William Gillette
Journal:  Protein Expr Purif       Date:  2020-06-04       Impact factor: 1.650

6.  A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis.

Authors:  Jasenko Zivanov; Takanori Nakane; Sjors H W Scheres
Journal:  IUCrJ       Date:  2019-01-01       Impact factor: 4.769

7.  Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion.

Authors:  Donald J Benton; Antoni G Wrobel; Pengqi Xu; Chloë Roustan; Stephen R Martin; Peter B Rosenthal; John J Skehel; Steven J Gamblin
Journal:  Nature       Date:  2020-09-17       Impact factor: 49.962

8.  Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.

Authors:  Alexandra C Walls; Young-Jun Park; M Alejandra Tortorici; Abigail Wall; Andrew T McGuire; David Veesler
Journal:  Cell       Date:  2020-12-10       Impact factor: 41.582

9.  Novel SARS-like betacoronaviruses in bats, China, 2011.

Authors:  Li Yang; Zhiqiang Wu; Xianwen Ren; Fan Yang; Guimei He; Junpeng Zhang; Jie Dong; Lilian Sun; Yafang Zhu; Jiang Du; Shuyi Zhang; Qi Jin
Journal:  Emerg Infect Dis       Date:  2013-06       Impact factor: 6.883

10.  The proximal origin of SARS-CoV-2.

Authors:  Kristian G Andersen; Andrew Rambaut; W Ian Lipkin; Edward C Holmes; Robert F Garry
Journal:  Nat Med       Date:  2020-04       Impact factor: 87.241
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  19 in total

1.  In vitro evolution predicts emerging SARS-CoV-2 mutations with high affinity for ACE2 and cross-species binding.

Authors:  Neil Bate; Christos G Savva; Peter C E Moody; Edward A Brown; Sian E Evans; Jonathan K Ball; John W R Schwabe; Julian E Sale; Nicholas P J Brindle
Journal:  PLoS Pathog       Date:  2022-07-18       Impact factor: 7.464

Review 2.  Severe acute respiratory syndrome coronavirus 2 variants-Possibility of universal vaccine design: A review.

Authors:  Eunhye Yoon; Dahyun Kim; Hyeeun Jeon; Yejin Kwon; Yejin Jang; Sulhee Kim; Kwang Yeon Hwang
Journal:  Comput Struct Biotechnol J       Date:  2022-06-23       Impact factor: 6.155

3.  [Covid-19 and the animal world, from a still mysterious origin towards an always unpredictable future].

Authors:  J Brugère-Picoux; E Leroy; S Rosolen; J-L Angot; Y Buisson
Journal:  Bull Acad Natl Med       Date:  2021-07-14       Impact factor: 0.432

4.  Should we discount the laboratory origin of COVID-19?

Authors:  Rossana Segreto; Yuri Deigin; Kevin McCairn; Alejandro Sousa; Dan Sirotkin; Karl Sirotkin; Jonathan J Couey; Adrian Jones; Daoyu Zhang
Journal:  Environ Chem Lett       Date:  2021-03-25       Impact factor: 13.615

5.  The evolutionary history of ACE2 usage within the coronavirus subgenus Sarbecovirus.

Authors:  H L Wells; M Letko; G Lasso; B Ssebide; J Nziza; D K Byarugaba; I Navarrete-Macias; E Liang; M Cranfield; B A Han; M W Tingley; M Diuk-Wasser; T Goldstein; C K Johnson; J A K Mazet; K Chandran; V J Munster; K Gilardi; S J Anthony
Journal:  Virus Evol       Date:  2021-02-05

Review 6.  Current Status of Putative Animal Sources of SARS-CoV-2 Infection in Humans: Wildlife, Domestic Animals and Pets.

Authors:  Max Maurin; Florence Fenollar; Oleg Mediannikov; Bernard Davoust; Christian Devaux; Didier Raoult
Journal:  Microorganisms       Date:  2021-04-17

Review 7.  On the origin and evolution of SARS-CoV-2.

Authors:  Devika Singh; Soojin V Yi
Journal:  Exp Mol Med       Date:  2021-04-16       Impact factor: 8.718

8.  Fine-tuning the spike: role of the nature and topology of the glycan shield in the structure and dynamics of the SARS-CoV-2 S.

Authors:  Aoife M Harbison; Carl A Fogarty; Toan K Phung; Akash Satheesan; Benjamin L Schulz; Elisa Fadda
Journal:  Chem Sci       Date:  2021-11-25       Impact factor: 9.825

9.  HiSpike Method for High-Throughput Cost Effective Sequencing of the SARS-CoV-2 Spike Gene.

Authors:  Ephraim Fass; Gal Zizelski Valenci; Mor Rubinstein; Paul J Freidlin; Shira Rosencwaig; Inna Kutikov; Robert Werner; Nofar Ben-Tovim; Efrat Bucris; Oran Erster; Neta S Zuckerman; Orna Mor; Ella Mendelson; Zeev Dveyrin; Efrat Rorman; Israel Nissan
Journal:  Front Med (Lausanne)       Date:  2022-01-11

10.  Characterisation of B.1.1.7 and Pangolin coronavirus spike provides insights on the evolutionary trajectory of SARS-CoV-2.

Authors:  Samuel J Dicken; Matthew J Murray; Lucy G Thorne; Ann-Kathrin Reuschl; Calum Forrest; Maaroothen Ganeshalingham; Luke Muir; Mphatso D Kalemera; Machaela Palor; Laura E McCoy; Clare Jolly; Greg J Towers; Matthew B Reeves; Joe Grove
Journal:  bioRxiv       Date:  2021-03-22
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