| Literature DB >> 33544928 |
Phil Liebing1, Cody Ross Pitts2, Marc Reimann3, Nils Trapp2, David Rombach2, Dustin Bornemann2, Martin Kaupp3, Antonio Togni2.
Abstract
The analysis of crystal structures of SF5 - or SF4 -containing molecules revealed that these groups are often surrounded byEntities:
Keywords: Hammett plot; crystal structures; fluorine; halogen bonds; interaction energy
Year: 2021 PMID: 33544928 PMCID: PMC8048635 DOI: 10.1002/chem.202100163
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
Figure 1Different arrangements of F⋅⋅⋅F contacts: a) Type I (predominant van‐der‐Waals contacts), b) Type II (“real” halogen bonds according to IUPAC definition ).
Figure 2Numbers of SF5 (black) and SF4 (grey) crystal structures published in the CSD, sorted after publication year (until November 2019).
General statistics on intermolecular SF⋅⋅⋅H and SF⋅⋅⋅F contacts in crystal structures of X‐SF5 and X‐SF4‐Y molecules, including CSD data as well as compounds 1–4 reported here (Duplicates, structures with disordered SF5 groups, and datasets with R 1 >0.075 omitted).
|
|
Entries total |
F⋅⋅⋅H<260 pm[a] |
279.3 ppm<F⋅⋅⋅F<308.7 pm |
F⋅⋅⋅F<279.3 pm |
|---|---|---|---|---|
|
aryl−SF5 |
110 |
74 (67 %) |
62 (56 %) |
26 (24 %) |
|
olefinic C(sp2)−SF5 |
14 |
5 (36 %) |
7 (50 %) |
5 (36 %) |
|
C(sp3)−SF5 |
26 |
11 (42 %)[b] |
11 (42 %) |
6 (23 %) |
|
X−SF5 (X=N or O group) |
13 |
4 (31 %)[b] |
10 (77 %) |
– |
|
|
25 |
13 (52 %) |
13 (52 %) |
1 (4 %) |
|
|
4 |
– |
2 (50 %) |
1 (25 %) |
|
sum |
192 |
107 (56 %) |
105 (55 %) |
39 (20 %) |
[a] Based on X‐ray crystallographic data and therefore on imprecise determination of hydrogen atomic coordinates. [b] The real abundance might be higher as the H atoms are missing in some datasets.
Abundance of Feq⋅⋅⋅H and Fax⋅⋅⋅H contacts among 163 crystallographic datasets with intermolecular X−SF5⋅⋅⋅H contacts shorter than 260 pm.
|
X |
Overall entries |
Thereof relevant |
Feq⋅⋅⋅H |
Fax⋅⋅⋅H |
|---|---|---|---|---|
|
aryl |
110 |
74 (67 %) |
48 (44 %) |
27 (24 %) |
|
olefinic C(sp2) |
14 |
5 (36 %) |
4 (29 %) |
1 (7 %) |
|
C(sp3) |
26 |
11 (42 %) |
9 (35 %) |
2 (8 %) |
|
N or O group |
13 |
4 (31 %) |
3 (23 %) |
1 (8 %) |
|
sum |
163 |
94 (58 %) |
63 (39 %) |
31 (19 %) |
Abundance of Type I and Type II SF5⋅⋅⋅F5S contacts shorter than 279.3 pm (=95 % of the vdW sum of two F atoms) among 163 crystallographic datasets of X−SF5 compounds, according to Figure 1.
|
X |
Overall entries |
Thereof relevant |
Type I |
Type II |
Undefined |
|---|---|---|---|---|---|
|
aryl |
110 |
26 (24 %) |
20 (18 %) |
3 (3 %) |
3 (3 %) |
|
olefinic C(sp2) |
14 |
5 (36 %) |
3 (21 %) |
2 (14 %) |
– |
|
C(sp3) |
26 |
6 (23 %) |
6 (23 %) |
– |
– |
|
N or O group |
13 |
0 (0 %) |
– |
– |
– |
|
sum |
163 |
37 (23 %) |
29 (18 %) |
5 (3 %) |
3 (2 %) |
Abundance of different SF5⋅⋅⋅F contacts shorter than 279.3 pm (=95 % of the vdW sum of two F atoms ) among 163 crystallographic datasets of X−SF5 compounds (Fother=F atom of substituent other than SF5).
|
|
Overall entries |
Thereof relevant |
Feq⋅⋅⋅Feq |
Feq⋅⋅⋅Fax |
Feq⋅⋅⋅Fother |
Fax⋅⋅⋅Fax |
Fax⋅⋅⋅Fother |
|---|---|---|---|---|---|---|---|
|
aryl−SF5 |
110 |
26 (24 %) |
16 (15 %) |
6 (5 %) |
1 (1 %) |
2 (2 %) |
1 (1 %) |
|
olefinic C(sp2)−SF5 |
14 |
5 (36 %) |
2 (14 %) |
1 (7 %) |
1 (7 %) |
– |
1 (7 %) |
|
C(sp3)−SF5 |
26 |
6 (23 %) |
4 (15 %) |
– |
1 (4 %) |
1 (4 %) |
– |
|
N or O group |
13 |
0 (0 %) |
– |
– |
– |
– |
– |
|
sum |
163 |
37 (23 %) |
22 (13 %) |
7 (4 %) |
3 (2 %) |
3 (2 %) |
2 (1 %) |
Figure 3Observed supramolecular structural motifs in crystal structures of SF5‐substituted molecules: infinite chains (a, d), open‐chain dimers (b, e, g), and cyclic dimers* (c, f). Blue=Feq, Red=Fax. *syn or anti arrangement of the X groups is possible; shown is the respective syn isomer.
Figure 4SF5‐ and SF4Cl‐substituted molecules that have been structurally characterized in the course of this work; note that 2 and 4 represent the first examples of SF4Cl‐substituted compounds characterized in the solid state.
Figure 5Hammett plot on the σ‐hole at the axial F atom in substituted Ph‐SF5 molecules (electrostatic potential surfaces calculated at SCS‐MP2/aug‐cc‐pVTZ level and at a 0.001 electron bohr−3 isovalue surface of the electron density). The IF4‐substituted molecule (compound 1) was omitted from the linear regression.
Interaction energies in kJ mol−1 for the R−SF5 dimers shown in Figure 3, calculated at SCS‐MP2‐F12 level using a cc‐pVTZ‐F12 basis set and counterpoise corrections in order to account for the basis set superposition error.
|
Contact |
F⋅⋅⋅F [pm] |
R=Ph |
R=‐C≡CH |
|---|---|---|---|
|
Feq⋅⋅⋅Feq (b), |
269.3 |
−10.1 |
−5.9 |
|
Feq⋅⋅⋅Feq (b), |
258.8 |
−9.3 |
±0.0 |
|
dual Feq⋅⋅⋅Feq (c) |
289.4 |
−13.5 |
−8.0 |
|
Feq⋅⋅⋅Fax (e) |
272.1 |
−4.6 |
−1.7 |
|
dual Feq⋅⋅⋅Fax (f) |
293.2 |
−2.1 |
−2.7 |
|
Fax⋅⋅⋅Fax (g) |
285.8 |
−0.1 |
−0.9 |
Crystal data and details on structure refinement for the compounds 1–4.
|
Compound |
|
|
|
|
|---|---|---|---|---|
|
CCDC |
2013886 |
2013887 |
2013888 |
2013889 |
|
molecular formula sum |
C6H4F9IS |
C7H6ClF4NO2S |
C7H6F5NO2S |
C12H8Cl2F4S |
|
formula weight [g mol−1] |
406.05 |
279.64 |
263.19 |
331.14 |
|
crystal system |
orthorhombic |
monoclinic |
monoclinic |
triclinic |
|
space group |
|
|
|
P |
|
|
6.9632(2) |
6.1797(1) |
6.2352(4) |
7.8901(6) |
|
|
8.8136(2) |
21.2904(4) |
19.7193(16) |
8.4624(7) |
|
|
32.914(1) |
7.8226(2) |
12.2091(11) |
10.5314(9) |
|
α [°] |
90 |
90 |
90 |
106.565(8) |
|
β [°] |
90 |
105.680(2) |
103.599(3) |
108.756(7) |
|
γ [°] |
90 |
90 |
90 |
94.523(7) |
|
|
2020.0(1) |
990.91(4) |
1459.1(2) |
626.8(1) |
|
molecules per cell |
8 |
4 |
6 |
2 |
|
electrons per cell |
1520 |
560 |
792 |
332 |
|
|
2.670 |
1.874 |
1.797 |
1.754 |
|
|
3.484 (MoKα) |
5.900 (CuKα) |
0.394 |
6.549 (CuKα) |
|
crystal shape and color |
colorless block |
colorless needle |
colorless plank |
colorless plate |
|
crystal size [mm] |
0.08×0.06×0.04 |
0.22×0.04×0.02 |
0.28×0.09×0.07 |
0.22×0.10×0.02 |
|
|
3.177 … 34.741 |
4.153 … 79.748 |
3.947 … 27.497 |
4.696 … 79.990 |
|
reflns collected |
28 728 |
10776 |
17079 |
11743 |
|
reflns unique |
3982 |
2116 |
3375 |
2629 |
|
reflns with |
3388 |
1941 |
2877 |
2242 |
|
completeness of dataset |
99.8 % |
100 % |
98.3 % |
99.7 % |
|
|
0.0333 |
0.0440 |
0.0418 |
0.0447 |
|
parameters; restraints |
154; 0 |
146; 0 |
256; 57 |
172; 6 |
|
|
0.0422; 0.0338 |
0.0661; 0.0625 |
0.0464; 0.0382 |
0.0918; 0.0843 |
|
|
0.0718; 0.0697 |
0.1740; 0.1714 |
0.1093; 0.1058 |
0.2593; 0.2512 |
|
GooF ( |
1.137 |
1.076 |
1.144 |
1.068 |
|
max. residual peaks |
−1.680; 1.590 |
−0.911; 0.903 |
−0.616; 0.339 |
−1.129; 1.410 |
[a] Twinned sample; HKLF5 used for final refinement. One molecule is disordered over a mirror plane. This measurement represents the best of many attempts; crystals were always very small and decomposed or redissolved rather quickly, especially after the vessel had been opened. Apart from these problems the refinement quality indicators are reasonable and the structural parameters are very similar to comparable compounds published in the CSD. [b] The moderate data quality is due to the fact that the crystals showed a layered platelet structure. The highest residual peaks hint at a full‐molecule disorder (pseudorotation about 180°), with very low occupancy of the second orientation. It cannot be excluded that the disordered part is a similar but different species. Aryl‐SF3, and to some extent, aryl‐SOF3 and aryl‐SO2F have been repeatedly observed in the product solution, so it is likely one of these compounds has co‐crystallized on the same position. However, none of these could be modelled as a disorder, which is plausible due to the low contribution and partial overlap of atomic positions. This would lead to collisions between adjacent cells, but crystal morphology hints at multicrystallinity or a form of twinning which could simulate disorder. The unmodelled disorder causes ambiguities in the Hirshfeld test for S and Cl, as well as some residual peaks and a relatively high wR 2 value.