Literature DB >> 33540807

Density Distribution Maps: A Novel Tool for Subcellular Distribution Analysis and Quantitative Biomedical Imaging.

Ilaria De Santis1,2, Michele Zanoni3, Chiara Arienti3, Alessandro Bevilacqua4,5, Anna Tesei3.   

Abstract

Subcellular spatial location is an essential descriptor of molecules biological function. Presently, super-resolution microscopy techniques enable quantification of subcellular objects distribution in fluorescence images, but they rely on instrumentation, tools and expertise not constituting a default for most of laboratories. We propose a method that allows resolving subcellular structures location by reinforcing each single pixel position with the information from surroundings. Although designed for entry-level laboratory equipment with common resolution powers, our method is independent from imaging device resolution, and thus can benefit also super-resolution microscopy. The approach permits to generate density distribution maps (DDMs) informative of both objects' absolute location and self-relative displacement, thus practically reducing location uncertainty and increasing the accuracy of signal mapping. This work proves the capability of the DDMs to: (a) improve the informativeness of spatial distributions; (b) empower subcellular molecules distributions analysis; (c) extend their applicability beyond mere spatial object mapping. Finally, the possibility of enhancing or even disclosing latent distributions can concretely speed-up routine, large-scale and follow-up experiments, besides representing a benefit for all spatial distribution studies, independently of the image acquisition resolution. DDMaker, a Software endowed with a user-friendly Graphical User Interface (GUI), is also provided to support users in DDMs creation.

Entities:  

Keywords:  computer-assisted; cultured; data visualization; distribution density maps; fluorescence; image processing; microscopy; subcellular mapping; tumor cells

Mesh:

Year:  2021        PMID: 33540807      PMCID: PMC7867329          DOI: 10.3390/s21031009

Source DB:  PubMed          Journal:  Sensors (Basel)        ISSN: 1424-8220            Impact factor:   3.576


  35 in total

Review 1.  Long noncoding RNAs and human disease.

Authors:  Orly Wapinski; Howard Y Chang
Journal:  Trends Cell Biol       Date:  2011-05-06       Impact factor: 20.808

Review 2.  Biological Insight from Super-Resolution Microscopy: What We Can Learn from Localization-Based Images.

Authors:  David Baddeley; Joerg Bewersdorf
Journal:  Annu Rev Biochem       Date:  2017-12-22       Impact factor: 23.643

3.  Establishment of a Customizable Fluorescent Probe Platform for the Organelle-Targeted Bioactive Species Detection.

Authors:  Dan Qiao; Landie Li; Tangliang Shen; Jiejie Yang; Hao Chang; Xiao Liang; Lu Zhang; Qianqian Wang; Ning Liu; Wei Zhao; Luqing Shang
Journal:  ACS Sens       Date:  2020-07-14       Impact factor: 7.711

4.  Molecular mechanism to recruit galectin-3 into multivesicular bodies for polarized exosomal secretion.

Authors:  Sebastian Bänfer; Dominik Schneider; Jenny Dewes; Maximilian T Strauss; Sven-A Freibert; Thomas Heimerl; Uwe G Maier; Hans-Peter Elsässer; Ralf Jungmann; Ralf Jacob
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-23       Impact factor: 11.205

5.  Biomedical Image Processing with Containers and Deep Learning: An Automated Analysis Pipeline: Data architecture, artificial intelligence, automated processing, containerization, and clusters orchestration ease the transition from data acquisition to insights in medium-to-large datasets.

Authors:  Germán González; Conor L Evans
Journal:  Bioessays       Date:  2019-05-16       Impact factor: 4.345

Review 6.  Navigating challenges in the application of superresolution microscopy.

Authors:  Talley J Lambert; Jennifer C Waters
Journal:  J Cell Biol       Date:  2016-12-05       Impact factor: 10.539

7.  Visualisation of Multiple Tight Junctional Complexes in Human Airway Epithelial Cells.

Authors:  Alysia G Buckley; Kevin Looi; Thomas Iosifidis; Kak-Ming Ling; Erika N Sutanto; Kelly M Martinovich; Elizabeth Kicic-Starcevich; Luke W Garratt; Nicole C Shaw; Francis J Lannigan; Alexander N Larcombe; Graeme Zosky; Darryl A Knight; Paul J Rigby; Anthony Kicic; Stephen M Stick
Journal:  Biol Proced Online       Date:  2018-02-01       Impact factor: 3.244

8.  Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison.

Authors:  Eva Wegel; Antonia Göhler; B Christoffer Lagerholm; Alan Wainman; Stephan Uphoff; Rainer Kaufmann; Ian M Dobbie
Journal:  Sci Rep       Date:  2016-06-06       Impact factor: 4.379

9.  Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells.

Authors:  Charlotte Floderer; Jean-Baptiste Masson; Elise Boilley; Sonia Georgeault; Peggy Merida; Mohamed El Beheiry; Maxime Dahan; Philippe Roingeard; Jean-Baptiste Sibarita; Cyril Favard; Delphine Muriaux
Journal:  Sci Rep       Date:  2018-11-02       Impact factor: 4.379

10.  Analytical Study of Hybrid Techniques for Image Encryption and Decryption.

Authors:  Chiranji Lal Chowdhary; Pushpam Virenbhai Patel; Krupal Jaysukhbhai Kathrotia; Muhammad Attique; Kumaresan P; Muhammad Fazal Ijaz
Journal:  Sensors (Basel)       Date:  2020-09-10       Impact factor: 3.576

View more
  1 in total

1.  Pro-inflammatory RNA:DNA Hybrids Are p53 Independently Boosted by Hyperbaric Oxygen: a Subcellular Distribution Analysis by Automated Quantitative Imaging.

Authors:  Ilaria De Santis; Michele Zanoni; Sara Pignatta; Pasquale Longobardi; Anna Tesei; Alessandro Bevilacqua
Journal:  Mol Imaging Biol       Date:  2022-10-19       Impact factor: 3.484

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.