Literature DB >> 36261778

Pro-inflammatory RNA:DNA Hybrids Are p53 Independently Boosted by Hyperbaric Oxygen: a Subcellular Distribution Analysis by Automated Quantitative Imaging.

Ilaria De Santis1, Michele Zanoni2, Sara Pignatta2, Pasquale Longobardi3, Anna Tesei4, Alessandro Bevilacqua5,6.   

Abstract

PURPOSE: RNA:DNA hybrids are co-transcriptional products with acknowledged cytoplasmic pro-inflammatory role as activators of the cGAS-STING pathway. We recently proved them also as radiation-induced senescence messages for the abscopal effect mediation, demonstrating the need for a functional p53 for their production and release in A549 and H1299 tumour cells. However, little is known about their role under different stress conditions, especially in cancer cells.
METHODS: In this work, we open the investigation making use of automated quantitative imaging to characterize the hybrid subcellular distribution in HeLa cells grown under different oxygen pressures or exposed to different ionizing radiation doses. After cell imaging by confocal fluorescent microscopy, we apply automated imaging methods developed on purpose to quantify hybrid foci and nuclear cluster intensity, regional and local density and dimension.
RESULTS: We show that alteration of culture oxygenation increases hybrid cytoplasmic presence, especially when caused by an hyperoxic environment, with evident hybrid gathering at the cell membrane. Ionizing radiations always fail to increase hybrids, in accordance with the absence of functional p53 in HeLa cells. However, dose-dependent effects are still evident and suggest a threshold dose of 7.5 Gy for remarkable hybrid reduction.
CONCLUSION: Together with our previous results, these data demonstrate for the first time that different types of stress can increase hybrid production in cancer cells and by at least two different pathways, one p53-dependent triggerable by ionizing radiations and one p53-independent triggerable by oxidative stress. Together, our findings provide a starting point for understanding hybrid role in tumour stress response.
© 2022. The Author(s).

Entities:  

Keywords:  Automated quantitative imaging; Cancer; Inflammation; Oxidative stress; Oxygen therapy; Radiotherapy; Tumour microenvironment

Year:  2022        PMID: 36261778     DOI: 10.1007/s11307-022-01778-2

Source DB:  PubMed          Journal:  Mol Imaging Biol        ISSN: 1536-1632            Impact factor:   3.484


  26 in total

1.  Identification of two HIV inhibitors that also inhibit human RNaseH2.

Authors:  Junghwan Kim; Jaewan Yoon; MoonKyeong Ju; Yunmi Lee; Tae-Hee Kim; Junwon Kim; Peter Sommer; Zaesung No; Jonathan Cechetto; Sung-Jun Han
Journal:  Mol Cells       Date:  2013-09-02       Impact factor: 5.034

2.  Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.

Authors:  Ruth Stuckey; Néstor García-Rodríguez; Andrés Aguilera; Ralf Erik Wellinger
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

3.  RNA-DNA hybrid formation at the human mitochondrial heavy-strand origin ceases at replication start sites: an implication for RNA-DNA hybrids serving as primers.

Authors:  B Xu; D A Clayton
Journal:  EMBO J       Date:  1996-06-17       Impact factor: 11.598

4.  Human mitochondrial degradosome prevents harmful mitochondrial R loops and mitochondrial genome instability.

Authors:  Sonia Silva; Lola P Camino; Andrés Aguilera
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

5.  RNA polymerase III regulates cytosolic RNA:DNA hybrids and intracellular microRNA expression.

Authors:  Christine Xing'er Koo; Kouji Kobiyama; Yu J Shen; Nina LeBert; Shandar Ahmad; Muznah Khatoo; Taiki Aoshi; Stephan Gasser; Ken J Ishii
Journal:  J Biol Chem       Date:  2015-01-26       Impact factor: 5.157

Review 6.  Role of RUNX Family Transcription Factors in DNA Damage Response.

Authors:  Ann Sanoji Samarakkody; Nah-Young Shin; Alan B Cantor
Journal:  Mol Cells       Date:  2020-02-29       Impact factor: 5.034

7.  Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids.

Authors:  John A Smolka; Lionel A Sanz; Stella R Hartono; Frédéric Chédin
Journal:  J Cell Biol       Date:  2021-06-07       Impact factor: 10.539

8.  Density Distribution Maps: A Novel Tool for Subcellular Distribution Analysis and Quantitative Biomedical Imaging.

Authors:  Ilaria De Santis; Michele Zanoni; Chiara Arienti; Alessandro Bevilacqua; Anna Tesei
Journal:  Sensors (Basel)       Date:  2021-02-02       Impact factor: 3.576

Review 9.  The pLysRS-Ap4A Pathway in Mast Cells Regulates the Switch from Host Defense to a Pathological State.

Authors:  Sharmila Govindaraj; Lakshmi Bhargavi Paruchuru; Ehud Razin
Journal:  Int J Mol Sci       Date:  2021-05-25       Impact factor: 5.923

10.  RNA:DNA hybrids are a novel molecular pattern sensed by TLR9.

Authors:  Rachel E Rigby; Lauren M Webb; Karen J Mackenzie; Yue Li; Andrea Leitch; Martin A M Reijns; Rachel J Lundie; Ailsa Revuelta; Donald J Davidson; Sandra Diebold; Yorgo Modis; Andrew S MacDonald; Andrew P Jackson
Journal:  EMBO J       Date:  2014-02-10       Impact factor: 11.598

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