Literature DB >> 33526784

A glucose meter interface for point-of-care gene circuit-based diagnostics.

Evan Amalfitano1, Margot Karlikow1, Masoud Norouzi1, Katariina Jaenes1, Seray Cicek1, Fahim Masum1, Peivand Sadat Mousavi1, Yuxiu Guo1, Laura Tang1, Andrew Sydor2, Duo Ma3, Joel D Pearson4,5,6, Daniel Trcka4, Mathieu Pinette7, Aruna Ambagala7, Shawn Babiuk7, Bradley Pickering7,8,9, Jeff Wrana4,10, Rod Bremner4,5,6, Tony Mazzulli6,11, David Sinton12, John H Brumell2,10,13,14, Alexander A Green3,15, Keith Pardee16,17.   

Abstract

Recent advances in cell-free synthetic biology have given rise to gene circuit-based sensors with the potential to provide decentralized and low-cost molecular diagnostics. However, it remains a challenge to deliver this sensing capacity into the hands of users in a practical manner. Here, we leverage the glucose meter, one of the most widely available point-of-care sensing devices, to serve as a universal reader for these decentralized diagnostics. We describe a molecular translator that can convert the activation of conventional gene circuit-based sensors into a glucose output that can be read by off-the-shelf glucose meters. We show the development of new glucogenic reporter systems, multiplexed reporter outputs and detection of nucleic acid targets down to the low attomolar range. Using this glucose-meter interface, we demonstrate the detection of a small-molecule analyte; sample-to-result diagnostics for typhoid, paratyphoid A/B; and show the potential for pandemic response with nucleic acid sensors for SARS-CoV-2.

Entities:  

Year:  2021        PMID: 33526784     DOI: 10.1038/s41467-020-20639-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  48 in total

1.  Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.

Authors:  Keith Pardee; Alexander A Green; Melissa K Takahashi; Dana Braff; Guillaume Lambert; Jeong Wook Lee; Tom Ferrante; Duo Ma; Nina Donghia; Melina Fan; Nichole M Daringer; Irene Bosch; Dawn M Dudley; David H O'Connor; Lee Gehrke; James J Collins
Journal:  Cell       Date:  2016-05-06       Impact factor: 41.582

Review 2.  Engineering advanced cancer therapies with synthetic biology.

Authors:  Ming-Ru Wu; Barbara Jusiak; Timothy K Lu
Journal:  Nat Rev Cancer       Date:  2019-04       Impact factor: 60.716

3.  Portable, On-Demand Biomolecular Manufacturing.

Authors:  Keith Pardee; Shimyn Slomovic; Peter Q Nguyen; Jeong Wook Lee; Nina Donghia; Devin Burrill; Tom Ferrante; Fern R McSorley; Yoshikazu Furuta; Andyna Vernet; Michael Lewandowski; Christopher N Boddy; Neel S Joshi; James J Collins
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

Review 4.  Synthetic Biochemistry: The Bio-inspired Cell-Free Approach to Commodity Chemical Production.

Authors:  James U Bowie; Saken Sherkhanov; Tyler P Korman; Meaghan A Valliere; Paul H Opgenorth; Hongjiang Liu
Journal:  Trends Biotechnol       Date:  2020-01-23       Impact factor: 19.536

5.  Evolutionary selection of enzymatically synthesized semiconductors from biomimetic mineralization vesicles.

Authors:  Lukmaan A Bawazer; Michi Izumi; Dmitriy Kolodin; James R Neilson; Birgit Schwenzer; Daniel E Morse
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-07       Impact factor: 11.205

Review 6.  Recent developments in synthetic biology and metabolic engineering in microalgae towards biofuel production.

Authors:  Sheeja Jagadevan; Avik Banerjee; Chiranjib Banerjee; Chandan Guria; Rameshwar Tiwari; Mehak Baweja; Pratyoosh Shukla
Journal:  Biotechnol Biofuels       Date:  2018-06-30       Impact factor: 6.040

7.  A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers.

Authors:  Melissa K Takahashi; Xiao Tan; Aaron J Dy; Dana Braff; Reid T Akana; Yoshikazu Furuta; Nina Donghia; Ashwin Ananthakrishnan; James J Collins
Journal:  Nat Commun       Date:  2018-08-21       Impact factor: 14.919

8.  Complex cellular logic computation using ribocomputing devices.

Authors:  Alexander A Green; Jongmin Kim; Duo Ma; Pamela A Silver; James J Collins; Peng Yin
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

9.  Perspective: Solidifying the impact of cell-free synthetic biology through lyophilization.

Authors:  Keith Pardee
Journal:  Biochem Eng J       Date:  2018-10-15       Impact factor: 3.978

10.  Single-pot glycoprotein biosynthesis using a cell-free transcription-translation system enriched with glycosylation machinery.

Authors:  Thapakorn Jaroentomeechai; Jessica C Stark; Aravind Natarajan; Cameron J Glasscock; Laura E Yates; Karen J Hsu; Milan Mrksich; Michael C Jewett; Matthew P DeLisa
Journal:  Nat Commun       Date:  2018-07-12       Impact factor: 14.919

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  6 in total

1.  Characterization of Five Purine Riboswitches in Cellular and Cell-Free Expression Systems.

Authors:  Milca Rachel da Costa Ribeiro Lins; Graciely Gomes Corrêa; Laura Araujo da Silva Amorim; Rafael Augusto Lopes Franco; Nathan Vinicius Ribeiro; Victor Nunes de Jesus; Danielle Biscaro Pedrolli
Journal:  Curr Microbiol       Date:  2022-05-27       Impact factor: 2.188

Review 2.  Two Years into the COVID-19 Pandemic: Lessons Learned.

Authors:  Severino Jefferson Ribeiro da Silva; Jessica Catarine Frutuoso do Nascimento; Renata Pessôa Germano Mendes; Klarissa Miranda Guarines; Caroline Targino Alves da Silva; Poliana Gomes da Silva; Jurandy Júnior Ferraz de Magalhães; Justin R J Vigar; Abelardo Silva-Júnior; Alain Kohl; Keith Pardee; Lindomar Pena
Journal:  ACS Infect Dis       Date:  2022-08-08       Impact factor: 5.578

Review 3.  Effective Use of Linear DNA in Cell-Free Expression Systems.

Authors:  Megan A McSweeney; Mark P Styczynski
Journal:  Front Bioeng Biotechnol       Date:  2021-07-20

4.  Photothermal Detection of MicroRNA Using a Horseradish Peroxidase-Encapsulated DNA Hydrogel With a Portable Thermometer.

Authors:  Xiujuan Liu; Meixiang Zhang; Ze Chen; Jiuqing Cui; Long Yang; Zihe Lu; Fang Qi; Haixia Wang
Journal:  Front Bioeng Biotechnol       Date:  2021-12-13

5.  Cellular Computational Logic Using Toehold Switches.

Authors:  Seungdo Choi; Geonhu Lee; Jongmin Kim
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

6.  A Simple and Universal Nucleic Acid Assay Platform Based on Personal Glucose Meter Using SARS-CoV-2 N Gene as the Model.

Authors:  Tian Li; Rui Pan; Yuhan Wen; Jiaqi Xu; Liping Zhang; Suna He; Gaofeng Liang
Journal:  Biosensors (Basel)       Date:  2022-04-15
  6 in total

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