Literature DB >> 22679283

Evolutionary selection of enzymatically synthesized semiconductors from biomimetic mineralization vesicles.

Lukmaan A Bawazer1, Michi Izumi, Dmitriy Kolodin, James R Neilson, Birgit Schwenzer, Daniel E Morse.   

Abstract

The way nature evolves and sculpts materials using proteins inspires new approaches to materials engineering but is still not completely understood. Here, we present a cell-free synthetic biological platform to advance studies of biologically synthesized solid-state materials. This platform is capable of simultaneously exerting many of the hierarchical levels of control found in natural biomineralization, including genetic, chemical, spatial, structural, and morphological control, while supporting the evolutionary selection of new mineralizing proteins and the corresponding genetically encoded materials that they produce. DNA-directed protein expression and enzymatic mineralization occur on polystyrene microbeads in water-in-oil emulsions, yielding synthetic surrogates of biomineralizing cells that are then screened by flow sorting, with light-scattering signals used to sort the resulting mineralized composites differentially. We demonstrate the utility of this platform by evolutionarily selecting newly identified silicateins, biomineralizing enzymes previously identified from the silica skeleton of a marine sponge, for enzyme variants capable of synthesizing silicon dioxide (silica) or titanium dioxide (titania) composites. Mineral composites of intermediate strength are preferentially selected to remain intact for identification during cell sorting, and then to collapse postsorting to expose the encoding genes for enzymatic DNA amplification. Some of the newly selected silicatein variants catalyze the formation of crystalline silicates, whereas the parent silicateins lack this ability. The demonstrated bioengineered route to previously undescribed materials introduces in vitro enzyme selection as a viable strategy for mimicking genetic evolution of materials as it occurs in nature.

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Year:  2012        PMID: 22679283      PMCID: PMC3387099          DOI: 10.1073/pnas.1116958109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly.

Authors:  S R Whaley; D S English; E L Hu; P F Barbara; A M Belcher
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

2.  3.4-Billion-year-old biogenic pyrites from Barberton, South Africa: sulfur isotope evidence.

Authors:  H Ohmoto; T Kakegawa; D R Lowe
Journal:  Science       Date:  1993-10-22       Impact factor: 47.728

3.  Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization.

Authors:  Andrew D Griffiths; Dan S Tawfik
Journal:  EMBO J       Date:  2003-01-02       Impact factor: 11.598

4.  Family shuffling with single-stranded DNA.

Authors:  Wenjuan Zha; Tongbo Zhu; Huimin Zhao
Journal:  Methods Mol Biol       Date:  2003

Review 5.  Molecular biomimetics: nanotechnology through biology.

Authors:  Mehmet Sarikaya; Candan Tamerler; Alex K-Y Jen; Klaus Schulten; François Baneyx
Journal:  Nat Mater       Date:  2003-09       Impact factor: 43.841

6.  Fibre-optical features of a glass sponge.

Authors:  Vikram C Sundar; Andrew D Yablon; John L Grazul; Micha Ilan; Joanna Aizenberg
Journal:  Nature       Date:  2003-08-21       Impact factor: 49.962

7.  Engineered iron oxide-adhesion mutants of the Escherichia coli phage lambda receptor.

Authors:  S Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

8.  RNA-mediated metal-metal bond formation in the synthesis of hexagonal palladium nanoparticles.

Authors:  Lina A Gugliotti; Daniel L Feldheim; Bruce E Eaton
Journal:  Science       Date:  2004-04-15       Impact factor: 47.728

9.  Skeleton of Euplectella sp.: structural hierarchy from the nanoscale to the macroscale.

Authors:  Joanna Aizenberg; James C Weaver; Monica S Thanawala; Vikram C Sundar; Daniel E Morse; Peter Fratzl
Journal:  Science       Date:  2005-07-08       Impact factor: 47.728

10.  Silica-precipitating peptides isolated from a combinatorial phage display peptide library.

Authors:  Rajesh R Naik; Lawrence L Brott; Stephen J Clarson; Morley O Stone
Journal:  J Nanosci Nanotechnol       Date:  2002-02
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  7 in total

Review 1.  Calcifying tissue regeneration via biomimetic materials chemistry.

Authors:  David W Green; Tazuko K Goto; Kye-Seong Kim; Han-Sung Jung
Journal:  J R Soc Interface       Date:  2014-12-06       Impact factor: 4.118

2.  Single-enzyme biomineralization of cadmium sulfide nanocrystals with controlled optical properties.

Authors:  Robert Dunleavy; Li Lu; Christopher J Kiely; Steven McIntosh; Bryan W Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-26       Impact factor: 11.205

3.  Combinatorial microfluidic droplet engineering for biomimetic material synthesis.

Authors:  Lukmaan A Bawazer; Ciara S McNally; Christopher J Empson; William J Marchant; Tim P Comyn; Xize Niu; Soongwon Cho; Michael J McPherson; Bernard P Binks; Andrew deMello; Fiona C Meldrum
Journal:  Sci Adv       Date:  2016-10-07       Impact factor: 14.136

Review 4.  Synthetic Biology Goes Cell-Free.

Authors:  Aidan Tinafar; Katariina Jaenes; Keith Pardee
Journal:  BMC Biol       Date:  2019-08-08       Impact factor: 7.431

5.  A glucose meter interface for point-of-care gene circuit-based diagnostics.

Authors:  Evan Amalfitano; Margot Karlikow; Masoud Norouzi; Katariina Jaenes; Seray Cicek; Fahim Masum; Peivand Sadat Mousavi; Yuxiu Guo; Laura Tang; Andrew Sydor; Duo Ma; Joel D Pearson; Daniel Trcka; Mathieu Pinette; Aruna Ambagala; Shawn Babiuk; Bradley Pickering; Jeff Wrana; Rod Bremner; Tony Mazzulli; David Sinton; John H Brumell; Alexander A Green; Keith Pardee
Journal:  Nat Commun       Date:  2021-02-01       Impact factor: 14.919

6.  A population-based experimental model for protein evolution: effects of mutation rate and selection stringency on evolutionary outcomes.

Authors:  Aaron M Leconte; Bryan C Dickinson; David D Yang; Irene A Chen; Benjamin Allen; David R Liu
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

Review 7.  The role of proteins in biosilicification.

Authors:  Daniel Otzen
Journal:  Scientifica (Cairo)       Date:  2012-10-01
  7 in total

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