Literature DB >> 31983463

Synthetic Biochemistry: The Bio-inspired Cell-Free Approach to Commodity Chemical Production.

James U Bowie1, Saken Sherkhanov2, Tyler P Korman3, Meaghan A Valliere2, Paul H Opgenorth4, Hongjiang Liu2.   

Abstract

Metabolic engineering efforts that harness living organisms to produce natural products and other useful chemicals face inherent difficulties because the maintenance of life processes often runs counter to our desire to maximize important production metrics. These challenges are particularly problematic for commodity chemical manufacturing where cost is critical. A cell-free approach, where biochemical pathways are built by mixing desired enzyme activities outside of cells, can obviate problems associated with cell-based methods. Yet supplanting cell-based methods of chemical production will require the creation of self-sustaining, continuously operating systems where input biomass is converted into desired products at high yields, productivities, and titers. We call the field of designing and implementing reliable and efficient enzyme systems that replace cellular metabolism, synthetic biochemistry.
Copyright © 2019 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Keywords:  biofuel; biomanufacturing; cascade biocatalysis; commodity chemical; enzyme cascade; green chemistry; metabolic engineering; multienzyme systems; natural products

Mesh:

Year:  2020        PMID: 31983463     DOI: 10.1016/j.tibtech.2019.12.024

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  14 in total

1.  A kinase-cGAS cascade to synthesize a therapeutic STING activator.

Authors:  John A McIntosh; Zhijian Liu; Brian M Andresen; Nastaran Salehi Marzijarani; Jeffrey C Moore; Nicholas M Marshall; Margie Borra-Garske; Jennifer V Obligacion; Patrick S Fier; Feng Peng; Jacob H Forstater; Matthew S Winston; Chihui An; Wonsuk Chang; Jongwon Lim; Mark A Huffman; Steven P Miller; Fuh-Rong Tsay; Michael D Altman; Charles A Lesburg; Dietrich Steinhuebel; B Wesley Trotter; Jared N Cumming; Alan Northrup; Xiaodong Bu; Benjamin F Mann; Mirlinda Biba; Kaori Hiraga; Grant S Murphy; Joshua N Kolev; Amanda Makarewicz; Weilan Pan; Iman Farasat; Rachel S Bade; Kevin Stone; Da Duan; Oscar Alvizo; Donovan Adpressa; Erik Guetschow; Erik Hoyt; Erik L Regalado; Steve Castro; Nelo Rivera; Joseph P Smith; Fengqiang Wang; Alejandro Crespo; Deeptak Verma; Stephanus Axnanda; Zachary E X Dance; Paul N Devine; David Tschaen; Keith A Canada; Paul G Bulger; Benjamin D Sherry; Matthew D Truppo; Rebecca T Ruck; Louis-Charles Campeau; David Jonathan Bennett; Guy R Humphrey; Kevin R Campos; Matthew L Maddess
Journal:  Nature       Date:  2022-03-16       Impact factor: 49.962

2.  Cell-Free Total Biosynthesis of Plant Terpene Natural Products using an Orthogonal Cofactor Regeneration System.

Authors:  Undramaa Bat-Erdene; John M Billingsley; William C Turner; Benjamin R Lichman; Francesca M Ippoliti; Neil K Garg; Sarah E O'Connor; Yi Tang
Journal:  ACS Catal       Date:  2021-07-23       Impact factor: 13.084

3.  A versatile active learning workflow for optimization of genetic and metabolic networks.

Authors:  Amir Pandi; Christoph Diehl; Ali Yazdizadeh Kharrazi; Scott A Scholz; Elizaveta Bobkova; Léon Faure; Maren Nattermann; David Adam; Nils Chapin; Yeganeh Foroughijabbari; Charles Moritz; Nicole Paczia; Niña Socorro Cortina; Jean-Loup Faulon; Tobias J Erb
Journal:  Nat Commun       Date:  2022-07-05       Impact factor: 17.694

4.  Expanding the use of ethanol as a feedstock for cell-free synthetic biochemistry by implementing acetyl-CoA and ATP generating pathways.

Authors:  Hongjiang Liu; Mark A Arbing; James U Bowie
Journal:  Sci Rep       Date:  2022-05-11       Impact factor: 4.996

Review 5.  Biosynthesis and synthetic biology of psychoactive natural products.

Authors:  Cooper S Jamieson; Joshua Misa; Yi Tang; John M Billingsley
Journal:  Chem Soc Rev       Date:  2021-06-21       Impact factor: 60.615

6.  Metabolic engineering of Escherichia coli for optimized biosynthesis of nicotinamide mononucleotide, a noncanonical redox cofactor.

Authors:  William B Black; Derek Aspacio; Danielle Bever; Edward King; Linyue Zhang; Han Li
Journal:  Microb Cell Fact       Date:  2020-07-27       Impact factor: 5.328

Review 7.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

8.  Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme.

Authors:  Christopher J Harding; Emmajay Sutherland; Jane G Hanna; Douglas R Houston; Clarissa M Czekster
Journal:  RSC Chem Biol       Date:  2021-01-15

9.  A glucose meter interface for point-of-care gene circuit-based diagnostics.

Authors:  Evan Amalfitano; Margot Karlikow; Masoud Norouzi; Katariina Jaenes; Seray Cicek; Fahim Masum; Peivand Sadat Mousavi; Yuxiu Guo; Laura Tang; Andrew Sydor; Duo Ma; Joel D Pearson; Daniel Trcka; Mathieu Pinette; Aruna Ambagala; Shawn Babiuk; Bradley Pickering; Jeff Wrana; Rod Bremner; Tony Mazzulli; David Sinton; John H Brumell; Alexander A Green; Keith Pardee
Journal:  Nat Commun       Date:  2021-02-01       Impact factor: 14.919

Review 10.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

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