| Literature DB >> 33521480 |
Taye B Demissie1,2,3, M Shyam Sundar1, Karthick Thangavel1,4, Valery Andrushchenko1, Ashutosh V Bedekar5, Petr Bouř1.
Abstract
Helicenes are known to provide extremely strong optical activity. Prediction of the properties of helicenes may facilitate their design and synthesis for analytical or materials sciences. On a model 7,12,17-trioxa[11]helicene molecule, experimental results from multiple spectroscopic techniques are analyzed on the basis of density functional theory (DFT) simulations to test computational methodology and analyze the origins of chirality. Infrared (IR), vibrational circular dichroism (VCD), electronic circular dichroism (ECD), magnetic circular dichroism (MCD), and Raman optical activity (ROA, computations only) spectra are compared. Large dissymmetry factors are predicted both for vibrational (ROA/Raman ∼ VCD/IR ∼ 10-3) and electronic (ECD/Abs ∼10-2) optical activity, which could be verified experimentally except for ROA. Largest VCD signals come from a strong vibrational coupling of the C-H in-plane and out-of-plane bending modes in stacked helicene rings. The sum-over-states (SOS) approach appeared convenient for simulation of MCD spectra. Our results demonstrated that selected computational methods can be successfully used for reliable modeling of spectral and chiroptical properties of large helicenes. In particular, they can be used for guiding rational design of strongly chiral chromophores.Entities:
Year: 2021 PMID: 33521480 PMCID: PMC7841950 DOI: 10.1021/acsomega.0c06079
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Chemical structure, ring numbering, and atom numbering of 7,12,17-trioxa[11]helicene.
Selected Experimental and Calculated Structural Parameters of Trioxa[11]helicene
| coordinate | experimental | B3LYP | error | ωB97X-D | error |
|---|---|---|---|---|---|
| bond length (Å) | |||||
| C–O | 1.367 | 1.368 | –0.001 | 1.361 | 0.006 |
| C′–O | 1.371 | 1.368 | 0.003 | 1.361 | 0.010 |
| C–C (inner) | 1.432 | 1.433 | –0.001 | 1.426 | 0.006 |
| C–C (inner) | 1.452 | 1.461 | –0.009 | 1.455 | –0.003 |
| C–C (inner) | 1.409 | 1.416 | –0.007 | 1.413 | –0.004 |
| C–C (outer) | 1.393 | 1.398 | –0.005 | 1.399 | –0.006 |
| C–C (outer) | 1.352 | 1.375 | –0.023 | 1.367 | –0.015 |
| C–C (outer) | 1.416 | 1.425 | –0.009 | 1.424 | –0.008 |
| angle (degree) | |||||
| ∠OO′O | 42.8 | 42.2 | 0.6 | 40.3 | 2.5 |
| ∠OOO′ | 68.3 | 68.9 | –0.6 | 69.9 | –1.6 |
| ∠CCCC (5mr) | –7.1 | –7.3 | 0.2 | –7.1 | 0.0 |
| ∠CCCC (5-to-5) | –23.7 | –23.3 | –0.4 | –20.6 | –3.1 |
| nonbonding (Å) | |||||
| 10.030 | 10.130 | –0.100 | 10.240 | –0.210 | |
| 5.466 | 5.868 | 0.185 | 5.651 | –0.217 | |
| 7.905 | 8.299 | 0.122 | 8.027 | –0.272 | |
C–C bonds at the inner part and one bond far from the five-membered rings.
C–C bonds at the inner part and part of the five-membered ring.
C–C bonds at the inner part of the last six-membered ring.
C–C bonds at the outer part and one bond far from the five-membered rings.
C–C bonds at the outer part and part of the six-membered rings.
C–C bonds at the outer part and three bonds far from the five-membered rings, A: the distance between hydrogen atoms at a nearly 180° orientation; r1: C(1)–C(23) nonbonding distance; r2: C(2)–C(22) nonbonding distance. Note that this numbering only considers the H–C and O atoms. Error = experimental – calculated.
Figure 2Comparison of the experimental (measured in THF) and calculated (B3LYP/PCM(THF)) absorption spectra (top). Black Arabic numbers show experimental peak positions, red Roman numerals correspond to the calculated band assignment in Table , vertical green lines indicate relative transition intensities and positions. Frontier molecular orbitals and energies (B3LYP/6-311++G**/PCM(THF)) (bottom).
Strongest Lowest-Energy Electronic Transitions in Trioxa[11]helicene, Wavelength (λ, in nm), Oscillator Strength (f), Transition Electric Dipole Moments (μ, in debyes), Dominant MOs, and Symmetry (TD-B3LYP/6-311++G**/PCM(THF) Calculation)
| band | excitation # | λ (nm) | μ | dominant MOs | symmetry | |
|---|---|---|---|---|---|---|
| I | 1 | 418.9 | 0.0660 | 2.31 | 142 → 143 | A |
| II | 2 | 402.5 | 0.1514 | 5.10 | 142 → 144 (90%) | B |
| III | 3 | 387.8 | 0.0990 | 3.21 | 141 → 143 (95%) | B |
| IV | 5 | 368.0 | 0.2163 | 6.66 | 142 → 145 (87%) | B |
| V | 6 | 338.8 | 0.0522 | 1.48 | 141 → 145 (91%) | A |
| VI | 9 | 317.3 | 0.1202 | 3.19 | 140 → 143 (45%), 142 → 146 (34%) | B |
| VII | 16 | 296.5 | 0.1353 | 3.36 | 138 → 144 (39%), 141 → 147 (25%) | B |
| VIII | 21 | 284.5 | 0.0722 | 1.72 | 142 → 150 (33%), 141 → 149 (23%) | A |
| IX | 29 | 268.0 | 0.1530 | 3.43 | 141 → 149 (16%), 142 → 148 (14%), 136 → 134 (12%) | A |
| X | 38 | 253.7 | 0.0945 | 2.01 | 142 → 153 (27%), 136 → 145 (20%), 137 → 145 (17%) | A |
| XI | 65 | 229.5 | 0.1396 | 2.68 | 142 → 162 (34%), 138 → 149 (17%), 139 → 149 (10%) | B |
| XII | 104 | 210.0 | 0.5086 | 8.93 | 135 → 148 (12%), 134 → 147 (10%), 135 → 147 (10%) | A |
Molecular orbital 142 is the highest occupied molecular orbital (HOMO), whereas 143 is the lowest unoccupied molecular orbital (LUMO).
Figure 3Experimental ECD spectra (measured in THF) of E1 and E2 enantiomers (top) and experimental and calculated (B3LYP/PCM(THF)) ECD spectra of E2 (bottom). The peak positions relate to the experiment.
Figure 4Experimental (measured in THF) and calculated (B3LYP/PCM(THF)) MCD spectra. Black numbers show peak positions for the experiment, and red numbers relate to the calculated spectrum.
Figure 5Experimental IR (bottom), VCD (middle), and noise (top) spectra of the E1 and E2 enantiomers measured in CDCl3. The peak positions relate to E2.
Figure 6Experimental (measured in CDCl3) and calculated (B3LYP/PCM(CHCl3)) IR (bottom) and VCD (top) spectra for the E2 enantiomer (black numbers - experiment, red - calculated). The calculated wavenumbers were multiplied by a scaling factor of 0.9867. Experimental spectra of the enantiomers were averaged using (E2 – E1)/2 (VCD) and (E2 + E1)/2 (IR).
Experimental (Measured in CDCl3) and Calculated (B3LYP/PCM(CHCl3)) IR Absorption and VCD Band Wavenumbers (cm–1) for the E2 Enantiomer and Corresponding Band Assignmentsa
| experimental | calculated | |||
|---|---|---|---|---|
| IR | VCD | IR | VCD | assignment |
| 1621 | 1622(−) | 1631 | 1631(−) | ν (C–C) [R1,R11] |
| 1604 | 1606(−) | 1605 | 1606(−) | ν (C–C) [R4–R8] |
| 1580 | 1583(−) | 1591 | 1591(−) | |
| 1543 | 1550 | ν (C–C) + δin (C–H) | ||
| 1530 | 1530(+) | 1538 | 1539(+) | ν (C–C) + δin (C–H) |
| 1518 | 1517(−) | 1529 | 1529(−) | |
| 1464sh | 1462sh | δin (C–H) [R1,R2,R10,R11] | ||
| 1447 | 1448(+) | 1453 | 1459(+)/1448(−) | δin (C–H) + ν (C–C) |
| 1435 | 1437 | 1440(+)/1432(−) | ||
| 1373 | 1374(−) | 1377 | 1377(−) | δin(C–H) + ν (C–C) [R1,R2,R10,R11] |
| 1361 | 1360(−) | 1366 | 1372(+)/1363(−) | δin (C–H) + ν (C–C) [R4–R8] |
| 1342 | 1342(+) | 1342 | 1341(+) | δin (C–H) |
| 1265 | 1268(+) | 1261 | 1259(+) | ν (C–O) + δin(Ring breathing) |
| 1228 | 1240(−)/1222(+) | 1228 | 1240(−)/1225(+) | δin (C–H) + ν (C–O) |
| 1207 | 1207(+) | 1214 | 1214(+) | δin (C–H) [R1–R11] |
| 1135 | 1136(+) | 1139 | 1142(+) | δin (C–H) [R7,R8,R10,R11] |
| 1114 | 1114(−) | 1119 | 1119(−) | |
| 1089 | 1089(+) | 1087 | 1087(+) | δin (C–H) + ν (C–O) |
| 1001 | 1001(−) | 1003 | 1003(−) | ν (C–O) + δin(Ring breathing) [R1,R11] |
| 955 | 956(−) | 959 | 958(−) | δout (C–H) [R4,R5,R7,R8] |
ν – stretching, δin – in-plane bending, δout – out-of-plane bending, sh – shoulder. Calculated wavenumbers multiplied by a scaling factor of 0.9867 are listed.
Figure 7Calculated (B3LYP/PCM(CHCl3)) Raman and ROA spectra.