Literature DB >> 33507899

Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome.

Marco Aqil1, Selen Atasoy2,3, Morten L Kringelbach2,3, Rikkert Hindriks1.   

Abstract

Tools from the field of graph signal processing, in particular the graph Laplacian operator, have recently been successfully applied to the investigation of structure-function relationships in the human brain. The eigenvectors of the human connectome graph Laplacian, dubbed "connectome harmonics", have been shown to relate to the functionally relevant resting-state networks. Whole-brain modelling of brain activity combines structural connectivity with local dynamical models to provide insight into the large-scale functional organization of the human brain. In this study, we employ the graph Laplacian and its properties to define and implement a large class of neural activity models directly on the human connectome. These models, consisting of systems of stochastic integrodifferential equations on graphs, are dubbed graph neural fields, in analogy with the well-established continuous neural fields. We obtain analytic predictions for harmonic and temporal power spectra, as well as functional connectivity and coherence matrices, of graph neural fields, with a technique dubbed CHAOSS (shorthand for Connectome-Harmonic Analysis Of Spatiotemporal Spectra). Combining graph neural fields with appropriate observation models allows for estimating model parameters from experimental data as obtained from electroencephalography (EEG), magnetoencephalography (MEG), or functional magnetic resonance imaging (fMRI). As an example application, we study a stochastic Wilson-Cowan graph neural field model on a high-resolution connectome graph constructed from diffusion tensor imaging (DTI) and structural MRI data. We show that the model equilibrium fluctuations can reproduce the empirically observed harmonic power spectrum of resting-state fMRI data, and predict its functional connectivity, with a high level of detail. Graph neural fields natively allow the inclusion of important features of cortical anatomy and fast computations of observable quantities for comparison with multimodal empirical data. They thus appear particularly suitable for modelling whole-brain activity at mesoscopic scales, and opening new potential avenues for connectome-graph-based investigations of structure-function relationships.

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Year:  2021        PMID: 33507899      PMCID: PMC7872285          DOI: 10.1371/journal.pcbi.1008310

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  47 in total

Review 1.  Emerging concepts for the dynamical organization of resting-state activity in the brain.

Authors:  Gustavo Deco; Viktor K Jirsa; Anthony R McIntosh
Journal:  Nat Rev Neurosci       Date:  2011-01       Impact factor: 34.870

Review 2.  Nonlinear multivariate analysis of neurophysiological signals.

Authors:  Ernesto Pereda; Rodrigo Quian Quiroga; Joydeep Bhattacharya
Journal:  Prog Neurobiol       Date:  2005-11-14       Impact factor: 11.685

Review 3.  Waves, bumps, and patterns in neural field theories.

Authors:  S Coombes
Journal:  Biol Cybern       Date:  2005-07-30       Impact factor: 2.086

4.  Key role of coupling, delay, and noise in resting brain fluctuations.

Authors:  Gustavo Deco; Viktor Jirsa; A R McIntosh; Olaf Sporns; Rolf Kötter
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-03       Impact factor: 11.205

5.  How do spatially distinct frequency specific MEG networks emerge from one underlying structural connectome? The role of the structural eigenmodes.

Authors:  Prejaas Tewarie; Romesh Abeysuriya; Áine Byrne; George C O'Neill; Stamatios N Sotiropoulos; Matthew J Brookes; Stephen Coombes
Journal:  Neuroimage       Date:  2018-11-03       Impact factor: 6.556

6.  Mapping functional brain networks from the structural connectome: Relating the series expansion and eigenmode approaches.

Authors:  Prejaas Tewarie; Bastian Prasse; Jil M Meier; Fernando A N Santos; Linda Douw; Menno M Schoonheim; Cornelis J Stam; Piet Van Mieghem; Arjan Hillebrand
Journal:  Neuroimage       Date:  2020-04-23       Impact factor: 6.556

7.  Towards a model-based integration of co-registered electroencephalography/functional magnetic resonance imaging data with realistic neural population meshes.

Authors:  I Bojak; Thom F Oostendorp; Andrew T Reid; Rolf Kötter
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-10-13       Impact factor: 4.226

8.  Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease.

Authors:  Maxwell B Wang; Julia P Owen; Pratik Mukherjee; Ashish Raj
Journal:  PLoS Comput Biol       Date:  2017-06-22       Impact factor: 4.475

9.  Metastable brain waves.

Authors:  James A Roberts; Leonardo L Gollo; Romesh G Abeysuriya; Gloria Roberts; Philip B Mitchell; Mark W Woolrich; Michael Breakspear
Journal:  Nat Commun       Date:  2019-03-05       Impact factor: 14.919

10.  The Virtual Brain: a simulator of primate brain network dynamics.

Authors:  Paula Sanz Leon; Stuart A Knock; M Marmaduke Woodman; Lia Domide; Jochen Mersmann; Anthony R McIntosh; Viktor Jirsa
Journal:  Front Neuroinform       Date:  2013-06-11       Impact factor: 4.081

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  6 in total

1.  Correction: Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome.

Authors:  Marco Aqil; Selen Atasoy; Morten L Kringelbach; Rikkert Hindriks
Journal:  PLoS Comput Biol       Date:  2022-06-01       Impact factor: 4.779

2.  Predicting time-resolved electrophysiological brain networks from structural eigenmodes.

Authors:  Prejaas Tewarie; Bastian Prasse; Jil Meier; Kanad Mandke; Shaun Warrington; Cornelis J Stam; Matthew J Brookes; Piet Van Mieghem; Stamatios N Sotiropoulos; Arjan Hillebrand
Journal:  Hum Brain Mapp       Date:  2022-06-01       Impact factor: 5.399

3.  Disruption in structural-functional network repertoire and time-resolved subcortical fronto-temporoparietal connectivity in disorders of consciousness.

Authors:  Jitka Annen; Prejaas Tewarie; Rajanikant Panda; Aurore Thibaut; Ane Lopez-Gonzalez; Anira Escrichs; Mohamed Ali Bahri; Arjan Hillebrand; Gustavo Deco; Steven Laureys; Olivia Gosseries
Journal:  Elife       Date:  2022-08-02       Impact factor: 8.713

4.  Gradients of connectivity as graph Fourier bases of brain activity.

Authors:  Giulia Lioi; Vincent Gripon; Abdelbasset Brahim; François Rousseau; Nicolas Farrugia
Journal:  Netw Neurosci       Date:  2021-04-27

5.  DotMotif: an open-source tool for connectome subgraph isomorphism search and graph queries.

Authors:  Jordan K Matelsky; Elizabeth P Reilly; Erik C Johnson; Jennifer Stiso; Danielle S Bassett; Brock A Wester; William Gray-Roncal
Journal:  Sci Rep       Date:  2021-06-22       Impact factor: 4.996

6.  Diffusion-informed spatial smoothing of fMRI data in white matter using spectral graph filters.

Authors:  David Abramian; Martin Larsson; Anders Eklund; Iman Aganj; Carl-Fredrik Westin; Hamid Behjat
Journal:  Neuroimage       Date:  2021-05-14       Impact factor: 6.556

  6 in total

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