Literature DB >> 33507325

The role of micropeptides in biology.

Rui Vitorino1,2, Sofia Guedes3,4, Francisco Amado3,4, Manuel Santos5, Nobuyoshi Akimitsu6.   

Abstract

Micropeptides are small polypeptides coded by small open-reading frames. Progress in computational biology and the analyses of large-scale transcriptomes and proteomes have revealed that mammalian genomes produce a large number of transcripts encoding micropeptides. Many of these have been previously annotated as long noncoding RNAs. The role of micropeptides in cellular homeostasis maintenance has been demonstrated. This review discusses different types of micropeptides as well as methods to identify them, such as computational approaches, ribosome profiling, and mass spectrometry.

Entities:  

Keywords:  Long noncoding RNA; Short ORF; Upstream ORF; sORF; uORF

Mesh:

Substances:

Year:  2021        PMID: 33507325     DOI: 10.1007/s00018-020-03740-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  102 in total

1.  A micropeptide encoded by a putative long noncoding RNA regulates muscle performance.

Authors:  Douglas M Anderson; Kelly M Anderson; Chi-Lun Chang; Catherine A Makarewich; Benjamin R Nelson; John R McAnally; Prasad Kasaragod; John M Shelton; Jen Liou; Rhonda Bassel-Duby; Eric N Olson
Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

2.  An Evolutionarily Conserved uORF Regulates PGC1α and Oxidative Metabolism in Mice, Flies, and Bluefin Tuna.

Authors:  Phillip A Dumesic; Daniel F Egan; Philipp Gut; Mei T Tran; Alice Parisi; Nirmalya Chatterjee; Mark Jedrychowski; Margherita Paschini; Lawrence Kazak; Sarah E Wilensky; Florence Dou; Dina Bogoslavski; Jeffrey A Cartier; Norbert Perrimon; Shingo Kajimura; Samir M Parikh; Bruce M Spiegelman
Journal:  Cell Metab       Date:  2019-05-16       Impact factor: 27.287

3.  Comparative genomic analysis identifies small open reading frames (sORFs) with peptide-encoding features in avian 16S rDNA.

Authors:  Mathieu Mortz; Cyril Dégletagne; Caroline Romestaing; Claude Duchamp
Journal:  Genomics       Date:  2019-06-24       Impact factor: 5.736

Review 4.  In Search of Lost Small Peptides.

Authors:  Serge Plaza; Gerben Menschaert; François Payre
Journal:  Annu Rev Cell Dev Biol       Date:  2017-07-31       Impact factor: 13.827

Review 5.  Mining for Micropeptides.

Authors:  Catherine A Makarewich; Eric N Olson
Journal:  Trends Cell Biol       Date:  2017-05-18       Impact factor: 20.808

6.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

Review 7.  Micropeptide.

Authors:  Maria E Sousa; Michael H Farkas
Journal:  PLoS Genet       Date:  2018-12-13       Impact factor: 5.917

8.  sORFs.org: a repository of small ORFs identified by ribosome profiling.

Authors:  Volodimir Olexiouk; Jeroen Crappé; Steven Verbruggen; Kenneth Verhegen; Lennart Martens; Gerben Menschaert
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

9.  Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans.

Authors:  Aleksandra E Kornienko; Christoph P Dotter; Philipp M Guenzl; Heinz Gisslinger; Bettina Gisslinger; Ciara Cleary; Robert Kralovics; Florian M Pauler; Denise P Barlow
Journal:  Genome Biol       Date:  2016-01-29       Impact factor: 13.583

10.  Regulation of the ER stress response by a mitochondrial microprotein.

Authors:  Qian Chu; Thomas F Martinez; Sammy Weiser Novak; Cynthia J Donaldson; Dan Tan; Joan M Vaughan; Tina Chang; Jolene K Diedrich; Leo Andrade; Andrew Kim; Tong Zhang; Uri Manor; Alan Saghatelian
Journal:  Nat Commun       Date:  2019-10-25       Impact factor: 14.919

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  5 in total

Review 1.  Functional Micropeptides Encoded by Long Non-Coding RNAs: A Comprehensive Review.

Authors:  Jianfeng Pan; Ruijun Wang; Fangzheng Shang; Rong Ma; Youjun Rong; Yanjun Zhang
Journal:  Front Mol Biosci       Date:  2022-06-13

Review 2.  The dark proteome: translation from noncanonical open reading frames.

Authors:  Bradley W Wright; Zixin Yi; Jonathan S Weissman; Jin Chen
Journal:  Trends Cell Biol       Date:  2021-11-26       Impact factor: 21.167

3.  Computational Analysis Predicts Hundreds of Coding lncRNAs in Zebrafish.

Authors:  Shital Kumar Mishra; Han Wang
Journal:  Biology (Basel)       Date:  2021-04-26

4.  Found in Translation: Novel Insights Into Type 1 Diabetes and β-Cell Biology.

Authors:  Holger A Russ; Howard W Davidson
Journal:  Diabetes       Date:  2021-10       Impact factor: 9.337

5.  Machine learning for the micropeptide encoded by LINC02381 regulates ferroptosis through the glucose transporter SLC2A10 in glioblastoma.

Authors:  Lan Jiang; Jianke Yang; Qiancheng Xu; Kun Lv; Yunpeng Cao
Journal:  BMC Cancer       Date:  2022-08-12       Impact factor: 4.638

  5 in total

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