Literature DB >> 28528987

Mining for Micropeptides.

Catherine A Makarewich1, Eric N Olson2.   

Abstract

Advances in computational biology and large-scale transcriptome analyses have revealed that a much larger portion of the genome is transcribed than was previously recognized, resulting in the production of a diverse population of RNA molecules with both protein-coding and noncoding potential. Emerging evidence indicates that several RNA molecules have been mis-annotated as noncoding and in fact harbor short open reading frames (sORFs) that encode functional peptides and that have evaded detection until now due to their small size. sORF-encoded peptides (SEPs), or micropeptides, have been shown to have important roles in fundamental biological processes and in the maintenance of cellular homeostasis. These small proteins can act independently, for example as ligands or signaling molecules, or they can exert their biological functions by engaging with and modulating larger regulatory proteins. Given their small size, micropeptides may be uniquely suited to fine-tune complex biological systems.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  bioactive peptide; micropeptide; ncRNA; short open reading frame

Mesh:

Substances:

Year:  2017        PMID: 28528987      PMCID: PMC5565689          DOI: 10.1016/j.tcb.2017.04.006

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  93 in total

Review 1.  Neuropeptide-processing enzymes: applications for drug discovery.

Authors:  Lloyd D Fricker
Journal:  AAPS J       Date:  2005-10-05       Impact factor: 4.009

2.  Proteogenomic database construction driven from large scale RNA-seq data.

Authors:  Sunghee Woo; Seong Won Cha; Gennifer Merrihew; Yupeng He; Natalie Castellana; Clark Guest; Michael MacCoss; Vineet Bafna
Journal:  J Proteome Res       Date:  2013-07-17       Impact factor: 4.466

3.  Detecting actively translated open reading frames in ribosome profiling data.

Authors:  Lorenzo Calviello; Neelanjan Mukherjee; Emanuel Wyler; Henrik Zauber; Antje Hirsekorn; Matthias Selbach; Markus Landthaler; Benedikt Obermayer; Uwe Ohler
Journal:  Nat Methods       Date:  2015-12-14       Impact factor: 28.547

Review 4.  Identifying (non-)coding RNAs and small peptides: challenges and opportunities.

Authors:  Andrea Pauli; Eivind Valen; Alexander F Schier
Journal:  Bioessays       Date:  2014-10-24       Impact factor: 4.345

5.  PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Authors:  Jeroen Crappé; Elvis Ndah; Alexander Koch; Sandra Steyaert; Daria Gawron; Sarah De Keulenaer; Ellen De Meester; Tim De Meyer; Wim Van Criekinge; Petra Van Damme; Gerben Menschaert
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

6.  Humanin peptide suppresses apoptosis by interfering with Bax activation.

Authors:  Bin Guo; Dayong Zhai; Edelmira Cabezas; Kate Welsh; Shahrzad Nouraini; Arnold C Satterthwait; John C Reed
Journal:  Nature       Date:  2003-05-04       Impact factor: 49.962

7.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

8.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

9.  The reality of pervasive transcription.

Authors:  Michael B Clark; Paulo P Amaral; Felix J Schlesinger; Marcel E Dinger; Ryan J Taft; John L Rinn; Chris P Ponting; Peter F Stadler; Kevin V Morris; Antonin Morillon; Joel S Rozowsky; Mark B Gerstein; Claes Wahlestedt; Yoshihide Hayashizaki; Piero Carninci; Thomas R Gingeras; John S Mattick
Journal:  PLoS Biol       Date:  2011-07-12       Impact factor: 8.029

10.  TISdb: a database for alternative translation initiation in mammalian cells.

Authors:  Ji Wan; Shu-Bing Qian
Journal:  Nucleic Acids Res       Date:  2013-11-06       Impact factor: 16.971

View more
  72 in total

Review 1.  The role of micropeptides in biology.

Authors:  Rui Vitorino; Sofia Guedes; Francisco Amado; Manuel Santos; Nobuyoshi Akimitsu
Journal:  Cell Mol Life Sci       Date:  2021-01-28       Impact factor: 9.261

Review 2.  Trends in peptide drug discovery.

Authors:  Markus Muttenthaler; Glenn F King; David J Adams; Paul F Alewood
Journal:  Nat Rev Drug Discov       Date:  2021-02-03       Impact factor: 84.694

3.  Arsenic exposure during embryonic development alters the expression of the long noncoding RNA growth arrest specific-5 (Gas5) in a sex-dependent manner.

Authors:  Kevin K Caldwell; Alexander Hafez; Elizabeth Solomon; Matthew Cunningham; Andrea M Allan
Journal:  Neurotoxicol Teratol       Date:  2017-11-11       Impact factor: 3.763

4.  Experimental Validation of the Noncoding Potential for lncRNAs.

Authors:  Emily A Dangelmaier; Ashish Lal
Journal:  Methods Mol Biol       Date:  2021

5.  An integrative proteogenomics approach reveals peptides encoded by annotated lincRNA in the mouse kidney inner medulla.

Authors:  Cameron T Flower; Lihe Chen; Hyun Jun Jung; Viswanathan Raghuram; Mark A Knepper; Chin-Rang Yang
Journal:  Physiol Genomics       Date:  2020-08-31       Impact factor: 3.107

Review 6.  Fiber type diversity in skeletal muscle explored by mass spectrometry-based single fiber proteomics.

Authors:  Stefano Schiaffino; Carlo Reggiani; Marta Murgia
Journal:  Histol Histopathol       Date:  2019-10-15       Impact factor: 2.303

Review 7.  When Long Noncoding Becomes Protein Coding.

Authors:  Corrine Corrina R Hartford; Ashish Lal
Journal:  Mol Cell Biol       Date:  2020-02-27       Impact factor: 4.272

Review 8.  Long non-coding RNAs regulating macrophage functions in homeostasis and disease.

Authors:  Kaitlyn R Scacalossi; Coen van Solingen; Kathryn J Moore
Journal:  Vascul Pharmacol       Date:  2018-03-13       Impact factor: 5.773

Review 9.  MOTS-c: A Mitochondrial-Encoded Regulator of the Nucleus.

Authors:  Bérénice A Benayoun; Changhan Lee
Journal:  Bioessays       Date:  2019-08-05       Impact factor: 4.345

10.  A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation.

Authors:  Bjoern Gaertner; Sebastiaan van Heesch; Valentin Schneider-Lunitz; Jana Felicitas Schulz; Franziska Witte; Susanne Blachut; Steven Nguyen; Regina Wong; Ileana Matta; Norbert Hübner; Maike Sander
Journal:  Elife       Date:  2020-08-03       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.