Literature DB >> 34844857

The dark proteome: translation from noncanonical open reading frames.

Bradley W Wright1, Zixin Yi1, Jonathan S Weissman2, Jin Chen3.   

Abstract

Omics-based technologies have revolutionized our understanding of the coding potential of the genome. In particular, these studies revealed widespread unannotated open reading frames (ORFs) throughout genomes and that these regions have the potential to encode novel functional (micro-)proteins and/or hold regulatory roles. However, despite their genomic prevalence, relatively few of these noncanonical ORFs have been functionally characterized, likely in part due to their under-recognition by the broader scientific community. The few that have been investigated in detail have demonstrated their essentiality in critical and divergent biological processes. As such, here we aim to discuss recent advances in understanding the diversity of noncanonical ORFs and their roles, as well as detail biologically important examples within the context of the mammalian genome.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR; microproteins; noncanonical ORFs; ribosome profiling; short ORFs; translation

Mesh:

Substances:

Year:  2021        PMID: 34844857      PMCID: PMC8934435          DOI: 10.1016/j.tcb.2021.10.010

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   21.167


  118 in total

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2.  Translation of upstream open reading frames in a model of neuronal differentiation.

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Journal:  Genome Res       Date:  2021-01-19       Impact factor: 9.043

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  6 in total

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Journal:  Mol Psychiatry       Date:  2022-09-21       Impact factor: 13.437

Review 3.  Small Open Reading Frames, How to Find Them and Determine Their Function.

Authors:  Preeti Madhav Kute; Omar Soukarieh; Håkon Tjeldnes; David-Alexandre Trégouët; Eivind Valen
Journal:  Front Genet       Date:  2022-01-28       Impact factor: 4.599

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5.  Translation of SARS-CoV-2 gRNA Is Extremely Efficient and Competitive despite a High Degree of Secondary Structures and the Presence of an uORF.

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  6 in total

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