Literature DB >> 33505439

The Draft Genome Sequence of a New Land-Hopper Platorchestia hallaensis.

Ajit Kumar Patra1, Oksung Chung2, Ji Yong Yoo3, Sang Ho Baek3, Tae Won Jung4, Min Seop Kim5, Moon Geun Yoon5, Youngik Yang6, Jeong-Hyeon Choi3.   

Abstract

Entities:  

Keywords:  Platorchestia; Talitridae; draft genome; land hopper; next generation sequencing

Year:  2021        PMID： 33505439      PMCID： PMC7831040          DOI： 10.3389/fgene.2020.621301

Source DB:  PubMed          Journal:  Front Genet        ISSN： 1664-8021            Impact factor:   4.599


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  43 in total

1.  PRINTS-S: the database formerly known as PRINTS.

Authors:  T K Attwood; M D Croning; D R Flower; A P Lewis; J E Mabey; P Scordis; J N Selley; W Wright
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  TimeTree: a public knowledge-base of divergence times among organisms.

Authors:  S Blair Hedges; Joel Dudley; Sudhir Kumar
Journal:  Bioinformatics       Date:  2006-10-04       Impact factor: 6.937

3.  GenBlastA: enabling BLAST to identify homologous gene sequences.

Authors:  Rong She; Jeffrey S-C Chu; Ke Wang; Jian Pei; Nansheng Chen
Journal:  Genome Res       Date:  2008-10-06       Impact factor: 9.043

4.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

5.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors:  Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

6.  GMAP: a genomic mapping and alignment program for mRNA and EST sequences.

Authors:  Thomas D Wu; Colin K Watanabe
Journal:  Bioinformatics       Date:  2005-02-22       Impact factor: 6.937

7.  The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.

Authors:  Helen C Poynton; Simone Hasenbein; Joshua B Benoit; Maria S Sepulveda; Monica F Poelchau; Daniel S T Hughes; Shwetha C Murali; Shuai Chen; Karl M Glastad; Michael A D Goodisman; John H Werren; Joseph H Vineis; Jennifer L Bowen; Markus Friedrich; Jeffery Jones; Hugh M Robertson; René Feyereisen; Alexandra Mechler-Hickson; Nicholas Mathers; Carol Eunmi Lee; John K Colbourne; Adam Biales; J Spencer Johnston; Gary A Wellborn; Andrew J Rosendale; Andrew G Cridge; Monica C Munoz-Torres; Peter A Bain; Austin R Manny; Kaley M Major; Faith N Lambert; Chris D Vulpe; Padrig Tuck; Bonnie J Blalock; Yu-Yu Lin; Mark E Smith; Hugo Ochoa-Acuña; Mei-Ju May Chen; Christopher P Childers; Jiaxin Qu; Shannon Dugan; Sandra L Lee; Hsu Chao; Huyen Dinh; Yi Han; HarshaVardhan Doddapaneni; Kim C Worley; Donna M Muzny; Richard A Gibbs; Stephen Richards
Journal:  Environ Sci Technol       Date:  2018-04-24       Impact factor: 9.028

8.  TIGRFAMs and Genome Properties in 2013.

Authors:  Daniel H Haft; Jeremy D Selengut; Roland A Richter; Derek Harkins; Malay K Basu; Erin Beck
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

9.  HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

Authors:  Tania Lima; Andrea H Auchincloss; Elisabeth Coudert; Guillaume Keller; Karine Michoud; Catherine Rivoire; Virginie Bulliard; Edouard de Castro; Corinne Lachaize; Delphine Baratin; Isabelle Phan; Lydie Bougueleret; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2008-10-11       Impact factor: 16.971

10.  First draft genome for the sand-hopper Trinorchestia longiramus.

Authors:  Ajit Kumar Patra; Oksung Chung; Ji Yong Yoo; Min Seop Kim; Moon Geun Yoon; Jeong-Hyeon Choi; Youngik Yang
Journal:  Sci Data       Date:  2020-03-09       Impact factor: 6.444
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