Literature DB >> 33503075

Characterization of the complete chloroplast genome of the Musk Larkspur Delphinium brunonianum (Ranunculales: Ranunculaceae).

Qien Li1,2, Xiao Guo1,2, Farong Yuan3, Cairang Nima2, Duojie Dongzhi2, XianJia Li1,2.   

Abstract

Musk Larkspur (Delphinium brunonianum) is a perennial herb of the family Ranunculace with medicinal values. In this study, the chloroplast (cp) genome of this herb was determined to be 153,926 bp long with an A + T-biased base composition, and comprises a pair of inverted repeat (IR) regions (26,559 bp), separated by a large single-copy (LSC) region (84,512 bp) and a small single-copy (SSC) region (16,296 bp). A total of 112 gene species were annotated with 19 of them being completely or partially duplicated. Eighteen gene species harbor one or two introns. Phylogenetic analysis challenged the monophyly of the subfamily Ranunculoideae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Delphinium brunonianum; Iterative mapping; Musk Larkspur; phylogeny; plastid genome

Year:  2020        PMID： 33503075      PMCID： PMC7782922          DOI： 10.1080/23802359.2020.1775522

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  12 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

3.  Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae.

Authors:  Wei Zhai; Xiaoshan Duan; Rui Zhang; Chunce Guo; Lin Li; Guixia Xu; Hongyan Shan; Hongzhi Kong; Yi Ren
Journal:  Mol Phylogenet Evol       Date:  2019-02-28       Impact factor: 4.286

4.  Plastome phylogenomics of the early-diverging eudicot family Berberidaceae.

Authors:  Yanxia Sun; Michael J Moore; Jacob B Landis; Nan Lin; Li Chen; Tao Deng; Jianwen Zhang; Aiping Meng; Shoujun Zhang; Komiljon Sh Tojibaev; Hang Sun; Hengchang Wang
Journal:  Mol Phylogenet Evol       Date:  2018-08-01       Impact factor: 4.286

5.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.

Authors:  Iain Milne; Dominik Lindner; Micha Bayer; Dirk Husmeier; Gráinne McGuire; David F Marshall; Frank Wright
Journal:  Bioinformatics       Date:  2008-11-04       Impact factor: 6.937

6.  The complete chloroplast genome of Mahonia eurybracteata subsp. Ganpinensis (H.Lév.) T. S. Ying & Boufford (Berberidaceae).

Authors:  Ruoqi Huang; Caihong Wang; Qiong Liang; Ying Wang; Tae-Jin Yang; Yanjun Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-12       Impact factor: 0.658

7.  The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China.

Authors:  Zhaoping Yang; Zhengkang Peng; Hongwei Zhang; Joongku Lee; Xuelian Liu; Chengxin Fu
Journal:  Mitochondrial DNA B Resour       Date:  2018-07-03       Impact factor: 0.658

8.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

9.  Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae).

Authors:  Jian He; Min Yao; Ru-Dan Lyu; Le-Le Lin; Hui-Jie Liu; Lin-Ying Pei; Shuang-Xi Yan; Lei Xie; Jin Cheng
Journal:  Sci Rep       Date:  2019-10-25       Impact factor: 4.379

10.  Recurrent gene duplication in the angiosperm tribe Delphinieae (Ranunculaceae) inferred from intracellular gene transfer events and heteroplasmic mutations in the plastid matK gene.

Authors:  Seongjun Park; Boram An; SeonJoo Park
Journal:  Sci Rep       Date:  2020-02-17       Impact factor: 4.379
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