| Literature DB >> 33474293 |
Zhaoping Yang1,2, Zhengkang Peng1, Hongwei Zhang3, Joongku Lee4, Xuelian Liu5, Chengxin Fu2.
Abstract
Gymnospermium kiangnanense is an endangered species in the family Berberidaceae. In this study, we assembled the chloroplast (cp) genome of G. kiangnanense and reconstructed the phylogenetic tree of Berberidaceae based on the complete cp genome. The cp genome of G. kiangnanense is 160,136 bp in length, comprising a pair of inverted repeat (IR) regions (26,424 bp) separated by a large single-copy (LSC) region (87,580 bp) and a small single-copy (SSC) region (19,708bp). The genome encodes 111 unique genes, consisting of 77 different protein-coding genes, 30 transfer RNA, and 4 ribosomal RNA genes, with 18 duplicated genes in the inverted repeats. Phylogenetic analysis indicates that G. kiangnanense is sister to G. microrrhynchum, and the Gymnospermium clade is closely related with Nandina.Entities:
Keywords: Berberidaceae; Gymnospermium kiangnanense; chloroplast genome; phylogenetic tree
Year: 2018 PMID: 33474293 PMCID: PMC7799652 DOI: 10.1080/23802359.2018.1483760
Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN: 2380-2359 Impact factor: 0.658