Literature DB >> 33474293

The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China.

Zhaoping Yang1,2, Zhengkang Peng1, Hongwei Zhang3, Joongku Lee4, Xuelian Liu5, Chengxin Fu2.   

Abstract

Gymnospermium kiangnanense is an endangered species in the family Berberidaceae. In this study, we assembled the chloroplast (cp) genome of G. kiangnanense and reconstructed the phylogenetic tree of Berberidaceae based on the complete cp genome. The cp genome of G. kiangnanense is 160,136 bp in length, comprising a pair of inverted repeat (IR) regions (26,424 bp) separated by a large single-copy (LSC) region (87,580 bp) and a small single-copy (SSC) region (19,708bp). The genome encodes 111 unique genes, consisting of 77 different protein-coding genes, 30 transfer RNA, and 4 ribosomal RNA genes, with 18 duplicated genes in the inverted repeats. Phylogenetic analysis indicates that G. kiangnanense is sister to G. microrrhynchum, and the Gymnospermium clade is closely related with Nandina.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Berberidaceae; Gymnospermium kiangnanense; chloroplast genome; phylogenetic tree

Year:  2018        PMID: 33474293      PMCID: PMC7799652          DOI: 10.1080/23802359.2018.1483760

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  2 in total

1.  Characterization of the complete chloroplast genome of the Musk Larkspur Delphinium brunonianum (Ranunculales: Ranunculaceae).

Authors:  Qien Li; Xiao Guo; Farong Yuan; Cairang Nima; Duojie Dongzhi; XianJia Li
Journal:  Mitochondrial DNA B Resour       Date:  2020-06-08       Impact factor: 0.658

2.  Plastid Phylogenomics and Plastome Evolution of Nandinoideae (Berberidaceae).

Authors:  Shiqiang Song; Dmitriy Zubov; Hans Peter Comes; Haiwen Li; Xuelian Liu; Xin Zhong; Joongku Lee; Zhaoping Yang; Pan Li
Journal:  Front Plant Sci       Date:  2022-06-30       Impact factor: 6.627

  2 in total

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