Literature DB >> 33497199

A Streptomyces venezuelae Cell-Free Toolkit for Synthetic Biology.

Simon J Moore1,2,3, Hung-En Lai1,2, Soo-Mei Chee2,4, Ming Toh1,2, Seth Coode3, Kameshwari Chengan3, Patrick Capel5, Christophe Corre5, Emmanuel Lc de Los Santos5, Paul S Freemont1,2,4,6.   

Abstract

Prokaryotic cell-free coupled transcription-translation (TX-TL) systems are emerging as a powerful tool to examine natural product biosynthetic pathways in a test tube. The key advantages of this approach are the reduced experimental time scales and controlled reaction conditions. To realize this potential, it is essential to develop specialized cell-free systems in organisms enriched for biosynthetic gene clusters. This requires strong protein production and well-characterized synthetic biology tools. The Streptomyces genus is a major source of natural products. To study enzymes and pathways from Streptomyces, we originally developed a homologous Streptomyces cell-free system to provide a native protein folding environment, a high G+C (%) tRNA pool, and an active background metabolism. However, our initial yields were low (36 μg/mL) and showed a high level of batch-to-batch variation. Here, we present an updated high-yield and robust Streptomyces TX-TL protocol, reaching up to yields of 266 μg/mL of expressed recombinant protein. To complement this, we rapidly characterize a range of DNA parts with different reporters, express high G+C (%) biosynthetic genes, and demonstrate an initial proof of concept for combined transcription, translation, and biosynthesis of Streptomyces metabolic pathways in a single "one-pot" reaction.

Entities:  

Keywords:  Streptomyces; cell-free protein synthesis; cell-free synthetic biology; in vitro transcription−translation; natural products

Year:  2021        PMID: 33497199      PMCID: PMC7901020          DOI: 10.1021/acssynbio.0c00581

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  47 in total

1.  The PURE system for the cell-free synthesis of membrane proteins.

Authors:  Yutetsu Kuruma; Takuya Ueda
Journal:  Nat Protoc       Date:  2015-08-13       Impact factor: 13.491

2.  Exploiting a precise design of universal synthetic modular regulatory elements to unlock the microbial natural products in Streptomyces.

Authors:  Chaoxian Bai; Yang Zhang; Xuejin Zhao; Yiling Hu; Sihai Xiang; Jin Miao; Chunbo Lou; Lixin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-15       Impact factor: 11.205

3.  Beta-glucuronidase as a sensitive and versatile reporter in actinomycetes.

Authors:  Maksym Myronovskyi; Elisabeth Welle; Viktor Fedorenko; Andriy Luzhetskyy
Journal:  Appl Environ Microbiol       Date:  2011-06-17       Impact factor: 4.792

4.  sigma(BldN), an extracytoplasmic function RNA polymerase sigma factor required for aerial mycelium formation in Streptomyces coelicolor A3(2).

Authors:  M J Bibb; V Molle; M J Buttner
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

5.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system.

Authors:  Filippo Caschera; Vincent Noireaux
Journal:  Biochimie       Date:  2013-12-08       Impact factor: 4.079

6.  Total in vitro biosynthesis of the nonribosomal macrolactone peptide valinomycin.

Authors:  Lei Zhuang; Shuhui Huang; Wan-Qiu Liu; Ashty S Karim; Michael C Jewett; Jian Li
Journal:  Metab Eng       Date:  2020-03-26       Impact factor: 9.783

7.  Measurements of translation initiation from all 64 codons in E. coli.

Authors:  Ariel Hecht; Jeff Glasgow; Paul R Jaschke; Lukmaan A Bawazer; Matthew S Munson; Jennifer R Cochran; Drew Endy; Marc Salit
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

Review 8.  A User's Guide to Cell-Free Protein Synthesis.

Authors:  Nicole E Gregorio; Max Z Levine; Javin P Oza
Journal:  Methods Protoc       Date:  2019-03-12

9.  An integrated cell-free metabolic platform for protein production and synthetic biology.

Authors:  Michael C Jewett; Kara A Calhoun; Alexei Voloshin; Jessica J Wuu; James R Swartz
Journal:  Mol Syst Biol       Date:  2008-10-14       Impact factor: 11.429

10.  Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems.

Authors:  Melissa K Takahashi; James Chappell; Clarmyra A Hayes; Zachary Z Sun; Jongmin Kim; Vipul Singhal; Kevin J Spring; Shaima Al-Khabouri; Christopher P Fall; Vincent Noireaux; Richard M Murray; Julius B Lucks
Journal:  ACS Synth Biol       Date:  2014-03-28       Impact factor: 5.110

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  5 in total

Review 1.  Streptomyces as Microbial Chassis for Heterologous Protein Expression.

Authors:  Soonkyu Hwang; Yongjae Lee; Ji Hun Kim; Gahyeon Kim; Hyeseong Kim; Woori Kim; Suhyung Cho; Bernhard O Palsson; Byung-Kwan Cho
Journal:  Front Bioeng Biotechnol       Date:  2021-12-21

Review 2.  Integrating perspectives in actinomycete research: an ActinoBase review of 2020-21.

Authors:  Agustina Undabarrena; Camila F Pereira; Worarat Kruasuwan; Jonathan Parra; Nelly Sélem-Mojica; Kristiina Vind; Jana K Schniete
Journal:  Microbiology (Reading)       Date:  2021-09       Impact factor: 2.777

3.  Constructing Cell-Free Expression Systems for Low-Cost Access.

Authors:  Fernando Guzman-Chavez; Anibal Arce; Abhinav Adhikari; Sandra Vadhin; Jose Antonio Pedroza-Garcia; Chiara Gandini; Jim W Ajioka; Jenny Molloy; Sobeida Sanchez-Nieto; Jeffrey D Varner; Fernan Federici; Jim Haseloff
Journal:  ACS Synth Biol       Date:  2022-03-08       Impact factor: 5.249

4.  Establishing a Klebsiella pneumoniae-Based Cell-Free Protein Synthesis System.

Authors:  Chen Yang; Miaomiao Yang; Wanhua Zhao; Yue Ding; Yu Wang; Jian Li
Journal:  Molecules       Date:  2022-07-22       Impact factor: 4.927

5.  A ubiquitous amino acid source for prokaryotic and eukaryotic cell-free transcription-translation systems.

Authors:  Lakshmeesha K Nagappa; Wakana Sato; Farzana Alam; Kameshwari Chengan; Christopher M Smales; Tobias Von Der Haar; Karen M Polizzi; Katarzyna P Adamala; Simon J Moore
Journal:  Front Bioeng Biotechnol       Date:  2022-09-16
  5 in total

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