| Literature DB >> 33495884 |
Abstract
PURPOSE: The coronavirus disease 2019 (COVID-19) pandemic has spread to all countries in the world, and different countries have been impacted differently. The study aims to understand what factors contribute to different COVID-19 impacts at the country level.Entities:
Keywords: Bacille Calmette–Guérin (BCG); COVID-19; Diphtheria–tetanus–pertussis (DTP3); SARS-CoV-2
Mesh:
Substances:
Year: 2021 PMID: 33495884 PMCID: PMC7831629 DOI: 10.1007/s15010-020-01566-6
Source DB: PubMed Journal: Infection ISSN: 0300-8126 Impact factor: 7.455
Fig. 1a Scatter plots in log scale of COVID-19 cases and deaths. b Scatter plots in log scale of COVID-19 cases and deaths per million. Only a subset of countries is labeled above its marker
Fig. 2Pairwise scatter plots of the indicated independent variables. Green shaded regions indicate p < 0.05 by Pearson’s correlation coefficient (see Table 1 for values)
Pearson’s correlation coefficients and p values for COVID deaths and other factors
| Total deaths per million | Tests per thousand | Stringency index | Population density | Median age | GDP per capita | Extreme poverty | Hospital beds/thousand | BCG Immuni-zation | DTP3 Immuni-zation | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total deaths per million | 1 | 0.24006 | 0.12363 | − 0.020814 | 0.30459 | 0.39375 | − 0.24 | 0.02363 | − 0.49612 | 0.23477 | |
| 1 | 0.11219 | 0.41846 | 0.89205 | 0.041914 | 0.0074484 | 0.11229 | 0.87755 | 5.285e-4 | 0.12057 | ||
| Tests per thousand | 0.24006 | 1 | − 0.33173 | − 0.036493 | 0.38069 | 0.76633 | − 0.29337 | 0.28211 | − 0.47359 | 0.34804 | |
| 0.11219 | 1 | 0.026004 | 0.81189 | 0.0098853 | 8.4839e-10 | 0.050481 | 0.060442 | 0.0010164 | 0.019138 | ||
| Stringency index | 0.12363 | − 0.33173 | 1 | 0.1241 | − 0.53818 | − 0.47519 | 0.24135 | − 0.44037 | 0.045849 | − 0.35718 | |
| 0.41846 | 0.026004 | 1 | 0.41669 | 0.00013723 | 0.00097169 | 0.11023 | 0.0024671 | 0.76489 | 0.016012 | ||
| Population density | − 0.020814 | − 0.036493 | 0.1241 | 1 | − 0.13849 | − 0.13351 | 0.17546 | − 0.077743 | − 0.069474 | − 0.16258 | |
| 0.89205 | 0.81189 | 0.41669 | 1 | 0.36428 | 0.38192 | 0.24896 | 0.61173 | 0.65021 | 0.28594 | ||
| Median age | 0.30459 | 0.38069 | − 0.53818 | − 0.13849 | 1 | 0.64273 | − 0.68238 | 0.70813 | − 0.24357 | 0.65846 | |
| 0.041914 | 0.0098853 | 0.00013723 | 0.36428 | 1 | 1.9316e-06 | 2.436e-07 | 5.2981e-08 | 0.10689 | 8.8096e-07 | ||
| GDP per capita | 0.39375 | 0.76633 | − 0.47519 | − 0.13351 | 0.64273 | 1 | − 0.49649 | 0.44154 | − 0.62533 | 0.48072 | |
| 0.0074484 | 8.4839e-10 | 0.00097169 | 0.38192 | 1.9316e-06 | 1 | 0.00052269 | 0.0023952 | 4.3777e-06 | 0.00083048 | ||
| Extreme poverty | − 0.24 | − 0.29337 | 0.24135 | 0.17546 | − 0.68238 | − 0.49649 | 1 | -0.44738 | 0.12645 | − 0.64954 | |
| 0.11229 | 0.050481 | 0.11023 | 0.24896 | 2.436e-07 | 0.00052269 | 1 | 0.0020614 | 0.40782 | 1.383e-06 | ||
| Hospital beds/thousand | 0.02363 | 0.28211 | − 0.44037 | − 0.077743 | 0.70813 | 0.44154 | − 0.44738 | 1 | 0.042477 | 0.51754 | |
| 0.87755 | 0.060442 | 0.0024671 | 0.61173 | 5.2981e-08 | 0.0023952 | 0.0020614 | 1 | 0.78174 | 0.00027185 | ||
| BCG Immunization | − 0.49612 | − 0.47359 | 0.045849 | − 0.069474 | − 0.24357 | − 0.62533 | 0.12645 | 0.042477 | 1 | − 0.09481 | |
| 5.285e-4 | 0.0010164 | 0.76489 | 0.65021 | 0.10689 | 4.3777e-06 | 0.40782 | 0.78174 | 1 | 0.53558 | ||
| DTP3 Immunization | 0.23477 | 0.34804 | − 0.35718 | − 0.16258 | 0.65846 | 0.48072 | − 0.64954 | 0.51754 | − 0.09481 | 1 | |
| 0.12057 | 0.019138 | 0.016012 | 0.28594 | 8.8096e-07 | 0.00083048 | 1.383e-06 | 0.00027185 | 0.53558 | 1 |
Pearson’s correlation coeffient and p value for the indicated independent variables compared in pairwise. Two-sided significance threshold was set at p < .05 (shaded in green)
Pearson’s correlation coefficients and p values for COVID cases and other factors
| Total cases per million | Tests per thousand | Stringency index | Population density | Median age | GDP per capita | Extreme poverty | Hospital beds/thousand | BCG Immuni-zation | DTP3 Immuni-zation | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total cases per million | 1 | 0.42886 | 0.2582 | − 0.099699 | 0.11561 | 0.36497 | − 0.22875 | − 0.021876 | − 0.22236 | 0.18427 | |
| 1 | 0.0032881 | 0.086803 | 0.51465 | 0.4495 | 0.013698 | 0.13068 | 0.88658 | 0.14207 | 0.22561 | ||
| Tests per thousand | 0.42886 | 1 | − 0.33173 | − 0.036493 | 0.38069 | 0.76633 | − 0.29337 | 0.28211 | − 0.47359 | 0.34804 | |
| 0.0032881 | 1 | 0.026004 | 0.81189 | 0.0098853 | 8.4839e-10 | 0.050481 | 0.060442 | 0.0010164 | 0.019138 | ||
| Stringency index | 0.2582 | − 0.33173 | 1 | 0.1241 | − 0.53818 | − 0.47519 | 0.24135 | − 0.44037 | 0.045849 | − 0.35718 | |
| 0.086803 | 0.026004 | 1 | 0.41669 | 0.00013723 | 0.00097169 | 0.11023 | 0.0024671 | 0.76489 | 0.016012 | ||
| Population density | − 0.099699 | − 0.036493 | 0.1241 | 1 | − 0.13849 | − 0.13351 | 0.17546 | − 0.077743 | − 0.069474 | − 0.16258 | |
| 0.51465 | 0.81189 | 0.41669 | 1 | 0.36428 | 0.38192 | 0.24896 | 0.61173 | 0.65021 | 0.28594 | ||
| Median age | 0.11561 | 0.38069 | − 0.53818 | − 0.13849 | 1 | 0.64273 | − 0.68238 | 0.70813 | − 0.24357 | 0.65846 | |
| 0.4495 | 0.0098853 | 0.00013723 | 0.36428 | 1 | 1.9316e-06 | 2.436e-07 | 5.2981e-08 | 0.10689 | 8.8096e-07 | ||
| GDP per capita | 0.36497 | 0.76633 | − 0.47519 | − 0.13351 | 0.64273 | 1 | -0.49649 | 0.44154 | − 0.62533 | 0.48072 | |
| 0.013698 | 8.4839e-10 | 0.00097169 | 0.38192 | 1.9316e-06 | 1 | 0.00052269 | 0.0023952 | 4.3777e-06 | 0.00083048 | ||
| Extreme poverty | − 0.22875 | − 0.29337 | 0.24135 | 0.17546 | − 0.68238 | − 0.49649 | 1 | − 0.44738 | 0.12645 | − 0.64954 | |
| 0.13068 | 0.050481 | 0.11023 | 0.24896 | 2.436e-07 | 0.00052269 | 1 | 0.0020614 | 0.40782 | 1.383e-06 | ||
| Hospital beds/thousand | − 0.021876 | 0.28211 | − 0.44037 | − 0.077743 | 0.70813 | 0.44154 | − 0.44738 | 1 | 0.042477 | 0.51754 | |
| 0.88658 | 0.060442 | 0.0024671 | 0.61173 | 5.2981e-08 | 0.0023952 | 0.0020614 | 1 | 0.78174 | 0.00027185 | ||
| BCG Immunization | − 0.22236 | − 0.47359 | 0.045849 | − 0.069474 | − 0.24357 | − 0.62533 | 0.12645 | 0.042477 | 1 | − 0.09481 | |
| 0.14207 | 0.0010164 | 0.76489 | 0.65021 | 0.10689 | 4.3777e-06 | 0.40782 | 0.78174 | 1 | 0.53558 | ||
| DTP3 Immunization | 0.18427 | 0.34804 | − 0.35718 | − 0.16258 | 0.65846 | 0.48072 | − 0.64954 | 0.51754 | − 0.09481 | 1 | |
| 0.22561 | 0.019138 | 0.016012 | 0.28594 | 8.8096e-07 | 0.00083048 | 1.383e-06 | 0.00027185 | 0.53558 | 1 |
Pearson’s correlation coeffient and p value for the indicated independent variables compared in pairwise. Two-sided significance threshold was set at p < .05 (shaded in green)
Multivariate analysis of COVID deaths
| Predictors | Estimate (b) | SE | ||
|---|---|---|---|---|
| (Intercept) | 85.1258 | 30.0668 | 2.8312 | 0.0051 |
| Tests per thousand | − 0.2288 | 0.1477 | − 1.5492 | 0.1229 |
| Stringency index | 0.5202 | 0.3479 | 1.4952 | 0.1364 |
| Population density | 0.0011 | 0.0073 | 0.1472 | 0.8831 |
| Median age | − 2.0553 | 1.1066 | − 1.8574 | 0.0647 |
| GDP per capita | 0.0018 | 0.0007 | 2.4233 | 0.0163 |
| Extreme poverty | − 1.0002 | 0.6836 | − 1.4631 | 0.1450 |
| Hospital beds/thousand | 1.2075 | 5.5085 | 0.2192 | 0.8267 |
| BCG Immunization | − 1.8233 | 0.3467 | − 5.2596 | 3.70e-07 |
| DTP3 Immunization | 1.8905 | 0.4680 | 4.0397 | 0.0001 |
Coefficient estimates (b) for a generalized linear regression of COVID deaths as responses on multiple predictors calculated using MATLAB glmfit function, with standard errors (SE), t statistics, and p values
Multivariate analysis of COVID cases
| Predictors | Estimate | SE | ||
|---|---|---|---|---|
| (Intercept) | 2260.4548 | 795.8747 | 2.8402 | 0.0050 |
| Tests per thousand | 10.2672 | 3.9101 | 2.6258 | 0.0093 |
| Stringency index | 25.7003 | 9.2095 | 2.7906 | 0.0058 |
| Population density | 0.0222 | 0.1920 | 0.1156 | 0.9081 |
| Median age | − 105.1955 | 29.2909 | − 3.5914 | 0.0004 |
| GDP per capita | 0.1074 | 0.0198 | 5.4144 | 1.75e-07 |
| Extreme poverty | − 39.1161 | 18.0948 | − 2.1617 | 0.0318 |
| Hospital beds/thousand | − 186.4294 | 145.8114 | − 1.2786 | 0.2025 |
| BCG Immunization | 1.0827 | 9.1760 | 0.1180 | 0.9062 |
| DTP3 Immunization | 15.1585 | 12.3878 | 1.2237 | 0.2225 |
Coefficient estimates (b) for a generalized linear regression of COVID cases as responses on multiple predictors calculated using MATLAB glmfit function, with standard errors (SE), t statistics, and p values
Fig. 3COVID-19 morbidity and mortality vs BCG immunization rates. a, b Total COVID-19 cases and deaths per million against BCG immunization rates for all countries and regions (n = 210) in the world. Only selected countries are labeled. Values of r, p indicate Pearson correlation coefficient and p value. c, d Boxplots of total COVID-19 cases and deaths per million for all countries and regions (n = 210) in the world, grouped by BCG vaccination rate of either < 50% (“No BCG”) or ≥ 50% (BCG). p values indicate the levels of difference between the two groups by two-tailed Student’s t test
Correlation coefficient in countries matched by median age
| Group | “Young” | “Medium” | “Old” | ||
|---|---|---|---|---|---|
| N | 50 | 75 | 61 | ||
| Min age | 15.1 | 23.1 | 36.2 | ||
| Country | Niger | Gabon | Trinidad and Tobago | ||
| Max age | 22.9 | 35.7 | 48.2 | ||
| Country | Guatemala | Armenia | Japan | ||
| BCG vs COVID cases | 0.095 | 0.065 | − 0.299 | ||
| 0.514 | 0.58 | 0.0192 | * | ||
| BCG vs COVID deaths | 0.082 | 0.12 | − 0.424 | ||
| 0.57 | 0.304 | 0.0007 | *** | ||
| BCG vs median Age | 0.201 | − 0.128 | 0.116 | ||
| 0.161 | 0.274 | 0.373 | |||
210 countries/regions were propensity score matched for median age into three groups. 24 countries were excluded due to the lack of median age information. Pearson’s correlation coefficient (r) and p value (p) are shown
*, ***Indicate significant levels, p < 0.5, p < 0.001
Fig. 4COVID-19 morbidity and mortality vs BCG immunization in “old” countries. a, b Total COVID-19 cases and deaths per million against BCG immunization rates for high median age (“old”) countries and regions (n = 61). r and p are from Pearson’s correlation coefficient analysis. c, d Boxplots of total COVID-19 cases and deaths per million “old” all countries in the world (n = 61), grouped by BCG vaccination rate of either < 50% (“No BCG”) or ≥ 50% (BCG). p values indicate the levels of difference between the two groups by two-tailed Student’s t test