Literature DB >> 33495590

A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida.

Louis Graf1, Younhee Shin1, Ji Hyun Yang1, Ji Won Choi1, Il Ki Hwang2, Wendy Nelson3,4, Debashish Bhattacharya5, Frédérique Viard6,7, Hwan Su Yoon8.   

Abstract

Human activity is an important driver of ecological and evolutionary change on our planet. In particular, domestication and biological introductions have important and long-lasting effects on species' genomic architecture and diversity. However, genome-wide analysis of independent domestication and introduction events within a single species has not previously been performed. The Pacific kelp Undaria pinnatifida provides such an opportunity because it has been cultivated in its native range in Northeast Asia but also introduced to four other continents in the past 50 years. Here we present the results of a genome-wide analysis of natural, cultivated and introduced populations of U. pinnatifida to elucidate human-driven evolutionary change. We demonstrate that these three categories of origin can be distinguished at the genome level, reflecting the combined influence of neutral (demography and migration) and non-neutral (selection) processes.

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Mesh:

Year:  2021        PMID: 33495590      PMCID: PMC7929912          DOI: 10.1038/s41559-020-01378-9

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  36 in total

Review 1.  Evolution of crop species: genetics of domestication and diversification.

Authors:  Rachel S Meyer; Michael D Purugganan
Journal:  Nat Rev Genet       Date:  2013-12       Impact factor: 53.242

2.  Genomics of invasion: diversity and selection in introduced populations of monkeyflowers (Mimulus guttatus).

Authors:  Joshua Puzey; Mario Vallejo-Marín
Journal:  Mol Ecol       Date:  2014-08-20       Impact factor: 6.185

Review 3.  Detecting the True Extent of Introgression during Anthropogenic Hybridization.

Authors:  S Eryn McFarlane; Josephine M Pemberton
Journal:  Trends Ecol Evol       Date:  2019-01-14       Impact factor: 17.712

Review 4.  How important is intraspecific genetic admixture to the success of colonising populations?

Authors:  Marc Rius; John A Darling
Journal:  Trends Ecol Evol       Date:  2014-03-15       Impact factor: 17.712

Review 5.  Domestication genomics: evidence from animals.

Authors:  Guo-Dong Wang; Hai-Bing Xie; Min-Sheng Peng; David Irwin; Ya-Ping Zhang
Journal:  Annu Rev Anim Biosci       Date:  2013-11-20       Impact factor: 8.923

6.  Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Authors:  Joshua C Stein; Yeisoo Yu; Dario Copetti; Derrick J Zwickl; Li Zhang; Chengjun Zhang; Kapeel Chougule; Dongying Gao; Aiko Iwata; Jose Luis Goicoechea; Sharon Wei; Jun Wang; Yi Liao; Muhua Wang; Julie Jacquemin; Claude Becker; Dave Kudrna; Jianwei Zhang; Carlos E M Londono; Xiang Song; Seunghee Lee; Paul Sanchez; Andrea Zuccolo; Jetty S S Ammiraju; Jayson Talag; Ann Danowitz; Luis F Rivera; Andrea R Gschwend; Christos Noutsos; Cheng-Chieh Wu; Shu-Min Kao; Jhih-Wun Zeng; Fu-Jin Wei; Qiang Zhao; Qi Feng; Moaine El Baidouri; Marie-Christine Carpentier; Eric Lasserre; Richard Cooke; Daniel da Rosa Farias; Luciano Carlos da Maia; Railson S Dos Santos; Kevin G Nyberg; Kenneth L McNally; Ramil Mauleon; Nickolai Alexandrov; Jeremy Schmutz; Dave Flowers; Chuanzhu Fan; Detlef Weigel; Kshirod K Jena; Thomas Wicker; Mingsheng Chen; Bin Han; Robert Henry; Yue-Ie C Hsing; Nori Kurata; Antonio Costa de Oliveira; Olivier Panaud; Scott A Jackson; Carlos A Machado; Michael J Sanderson; Manyuan Long; Doreen Ware; Rod A Wing
Journal:  Nat Genet       Date:  2018-01-22       Impact factor: 38.330

Review 7.  Birdsong and anthropogenic noise: implications and applications for conservation.

Authors:  Hans Slabbekoorn; Erwin A P Ripmeester
Journal:  Mol Ecol       Date:  2007-09-03       Impact factor: 6.185

8.  Marine invasions enter the genomic era: three lessons from the past, and the way forward.

Authors:  Frédérique Viard; Patrice David; John A Darling
Journal:  Curr Zool       Date:  2016-04-26       Impact factor: 2.624

9.  Sequencing of Chinese castor lines reveals genetic signatures of selection and yield-associated loci.

Authors:  Wei Fan; Jianjun Lu; Cheng Pan; Meilian Tan; Qiang Lin; Wanfei Liu; Donghai Li; Lijun Wang; Lianlian Hu; Lei Wang; Chen Chen; Aimin Wu; Xinxin Yu; Jue Ruan; Jun Yu; Songnian Hu; Xingchu Yan; Shiyou Lü; Peng Cui
Journal:  Nat Commun       Date:  2019-07-31       Impact factor: 14.919

10.  Genome-Wide Patterns of Population Structure and Linkage Disequilibrium in Farmed Nile Tilapia (Oreochromis niloticus).

Authors:  Grazyella M Yoshida; Agustín Barria; Katharina Correa; Giovanna Cáceres; Ana Jedlicki; María I Cadiz; Jean P Lhorente; José M Yáñez
Journal:  Front Genet       Date:  2019-09-04       Impact factor: 4.599

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  4 in total

1.  Genome-Wide Identification and Analysis of the Aureochrome Gene Family in Saccharina japonica and a Comparative Analysis with Six Other Algae.

Authors:  Yukun Wu; Pengyan Zhang; Zhourui Liang; Yanmin Yuan; Maohong Duan; Yi Liu; Di Zhang; Fuli Liu
Journal:  Plants (Basel)       Date:  2022-08-11

Review 2.  The Cell Wall Polysaccharides Biosynthesis in Seaweeds: A Molecular Perspective.

Authors:  Zhanru Shao; Delin Duan
Journal:  Front Plant Sci       Date:  2022-05-10       Impact factor: 6.627

Review 3.  Breeding in the Economically Important Brown Alga Undaria pinnatifida: A Concise Review and Future Prospects.

Authors:  Tifeng Shan; Shaojun Pang
Journal:  Front Genet       Date:  2021-12-01       Impact factor: 4.599

4.  Charting a course for genetic diversity in the UN Decade of Ocean Science.

Authors:  Alex Innes Thomson; Frederick I Archer; Melinda A Coleman; Gonzalo Gajardo; William P Goodall-Copestake; Sean Hoban; Linda Laikre; Adam D Miller; David O'Brien; Sílvia Pérez-Espona; Gernot Segelbacher; Ester A Serrão; Kjersti Sjøtun; Michele S Stanley
Journal:  Evol Appl       Date:  2021-05-04       Impact factor: 5.183

  4 in total

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