Literature DB >> 24240513

Evolution of crop species: genetics of domestication and diversification.

Rachel S Meyer1, Michael D Purugganan.   

Abstract

Domestication is a good model for the study of evolutionary processes because of the recent evolution of crop species (<12,000 years ago), the key role of selection in their origins, and good archaeological and historical data on their spread and diversification. Recent studies, such as quantitative trait locus mapping, genome-wide association studies and whole-genome resequencing studies, have identified genes that are associated with the initial domestication and subsequent diversification of crops. Together, these studies reveal the functions of genes that are involved in the evolution of crops that are under domestication, the types of mutations that occur during this process and the parallelism of mutations that occur in the same pathways and proteins, as well as the selective forces that are acting on these mutations and that are associated with geographical adaptation of crop species.

Mesh:

Year:  2013        PMID: 24240513     DOI: 10.1038/nrg3605

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  89 in total

1.  An SNP caused loss of seed shattering during rice domestication.

Authors:  Saeko Konishi; Takeshi Izawa; Shao Yang Lin; Kaworu Ebana; Yoshimichi Fukuta; Takuji Sasaki; Masahiro Yano
Journal:  Science       Date:  2006-04-13       Impact factor: 47.728

2.  Population genomic and genome-wide association studies of agroclimatic traits in sorghum.

Authors:  Geoffrey P Morris; Punna Ramu; Santosh P Deshpande; C Thomas Hash; Trushar Shah; Hari D Upadhyaya; Oscar Riera-Lizarazu; Patrick J Brown; Charlotte B Acharya; Sharon E Mitchell; James Harriman; Jeffrey C Glaubitz; Edward S Buckler; Stephen Kresovich
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

3.  Identification of a functional transposon insertion in the maize domestication gene tb1.

Authors:  Anthony Studer; Qiong Zhao; Jeffrey Ross-Ibarra; John Doebley
Journal:  Nat Genet       Date:  2011-09-25       Impact factor: 38.330

4.  The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene.

Authors:  Z Y Wang; F Q Zheng; G Z Shen; J P Gao; D P Snustad; M G Li; J L Zhang; M M Hong
Journal:  Plant J       Date:  1995-04       Impact factor: 6.417

5.  Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.

Authors:  Xun Xu; Xin Liu; Song Ge; Jeffrey D Jensen; Fengyi Hu; Xin Li; Yang Dong; Ryan N Gutenkunst; Lin Fang; Lei Huang; Jingxiang Li; Weiming He; Guojie Zhang; Xiaoming Zheng; Fumin Zhang; Yingrui Li; Chang Yu; Karsten Kristiansen; Xiuqing Zhang; Jian Wang; Mark Wright; Susan McCouch; Rasmus Nielsen; Jun Wang; Wen Wang
Journal:  Nat Biotechnol       Date:  2011-12-11       Impact factor: 54.908

6.  Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations.

Authors:  Bin Cong; Jiping Liu; Steven D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

7.  The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.

Authors:  Tsutomu Furukawa; Masahiko Maekawa; Tomoyuki Oki; Ikuo Suda; Shigeru Iida; Hiroaki Shimada; Itsuro Takamure; Koh-ichi Kadowaki
Journal:  Plant J       Date:  2006-12-06       Impact factor: 6.417

Review 8.  A bountiful harvest: genomic insights into crop domestication phenotypes.

Authors:  Kenneth M Olsen; Jonathan F Wendel
Journal:  Annu Rev Plant Biol       Date:  2013-02-28       Impact factor: 26.379

9.  New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties.

Authors:  Amandine Cornille; Pierre Gladieux; Marinus J M Smulders; Isabel Roldán-Ruiz; François Laurens; Bruno Le Cam; Anush Nersesyan; Joanne Clavel; Marina Olonova; Laurence Feugey; Ivan Gabrielyan; Xiu-Guo Zhang; Maud I Tenaillon; Tatiana Giraud
Journal:  PLoS Genet       Date:  2012-05-10       Impact factor: 5.917

10.  A map of rice genome variation reveals the origin of cultivated rice.

Authors:  Xuehui Huang; Nori Kurata; Xinghua Wei; Zi-Xuan Wang; Ahong Wang; Qiang Zhao; Yan Zhao; Kunyan Liu; Hengyun Lu; Wenjun Li; Yunli Guo; Yiqi Lu; Congcong Zhou; Danlin Fan; Qijun Weng; Chuanrang Zhu; Tao Huang; Lei Zhang; Yongchun Wang; Lei Feng; Hiroyasu Furuumi; Takahiko Kubo; Toshie Miyabayashi; Xiaoping Yuan; Qun Xu; Guojun Dong; Qilin Zhan; Canyang Li; Asao Fujiyama; Atsushi Toyoda; Tingting Lu; Qi Feng; Qian Qian; Jiayang Li; Bin Han
Journal:  Nature       Date:  2012-10-03       Impact factor: 49.962

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  264 in total

1.  Genetic Diversity of the Two Commercial Tetraploid Cotton Species in the Gossypium Diversity Reference Set.

Authors:  Lori L Hinze; Elodie Gazave; Michael A Gore; David D Fang; Brian E Scheffler; John Z Yu; Don C Jones; James Frelichowski; Richard G Percy
Journal:  J Hered       Date:  2016-01-16       Impact factor: 2.645

2.  Multiple Origin but Single Domestication Led to Oryza sativa.

Authors:  Jae Young Choi; Michael D Purugganan
Journal:  G3 (Bethesda)       Date:  2018-03-02       Impact factor: 3.154

3.  Patterns of nuclear and chloroplast genetic diversity and structure of manioc along major Brazilian Amazonian rivers.

Authors:  Alessandro Alves-Pereira; Charles R Clement; Doriane Picanço-Rodrigues; Elizabeth A Veasey; Gabriel Dequigiovanni; Santiago L F Ramos; José B Pinheiro; Maria I Zucchi
Journal:  Ann Bot       Date:  2018-03-14       Impact factor: 4.357

4.  Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).

Authors:  Steve Larson; Lee DeHaan; Jesse Poland; Xiaofei Zhang; Kevin Dorn; Traci Kantarski; James Anderson; Jeremy Schmutz; Jane Grimwood; Jerry Jenkins; Shengqiang Shu; Jared Crain; Matthew Robbins; Kevin Jensen
Journal:  Theor Appl Genet       Date:  2019-06-06       Impact factor: 5.699

5.  Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq.

Authors:  Eudald Illa-Berenguer; Jason Van Houten; Zejun Huang; Esther van der Knaap
Journal:  Theor Appl Genet       Date:  2015-04-18       Impact factor: 5.699

6.  Reinventing the green revolution by harnessing crop mutant resources.

Authors:  Peter Langridge
Journal:  Plant Physiol       Date:  2014-12       Impact factor: 8.340

7.  Domesticated versus Wild Rice? Bring It Awn!

Authors:  Jennifer Mach
Journal:  Plant Cell       Date:  2015-06-16       Impact factor: 11.277

8.  Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data.

Authors:  Paul D Blischak; Michael S Barker; Ryan N Gutenkunst
Journal:  Mol Biol Evol       Date:  2020-07-01       Impact factor: 16.240

9.  De novo domestication of wild tomato using genome editing.

Authors:  Agustin Zsögön; Tomáš Čermák; Emmanuel Rezende Naves; Marcela Morato Notini; Kai H Edel; Stefan Weinl; Luciano Freschi; Daniel F Voytas; Jörg Kudla; Lázaro Eustáquio Pereira Peres
Journal:  Nat Biotechnol       Date:  2018-10-01       Impact factor: 54.908

10.  Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication.

Authors:  Hideo Matsumura; Min-Chien Hsiao; Ya-Ping Lin; Atsushi Toyoda; Naoki Taniai; Kazuhiko Tarora; Naoya Urasaki; Shashi S Anand; Narinder P S Dhillon; Roland Schafleitner; Cheng-Ruei Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

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