The Strecker reaction is a three-component condensation of an aldehyde, an amine, and hydrogen cyanide, delivering an α-amino carbonitrile. Despite extensive investigations, the possibility to use amides instead of amines as one of the three condensation partners has been largely neglected. Nonetheless, the N-acylated α-aminocarbonitriles that are obtained in this way are of direct interest for drug discovery, because they make up a well-known class of mechanism-based inhibitors of serine- and cysteine-type hydrolases. In response, we have thoroughly explored the corresponding variant of the Strecker reaction, focusing on catalyst use, solvent, reaction time, and cyanide source. Optimized parameters were combined in a sequential one-pot protocol for which the scope was found to be compatible with library synthesis applications. Product yields ranged from 7 to 90%, and conditions were found to be mild and tolerant to a wide range of functional groups, including moieties that are typically present in druglike molecules.
The Strecker reaction is a three-component condensation of an aldehyde, an amine, and hydrogen cyanide, delivering an α-amino carbonitrile. Despite extensive investigations, the possibility to use amides instead of amines as one of the three condensation partners has been largely neglected. Nonetheless, the N-acylated α-aminocarbonitriles that are obtained in this way are of direct interest for drug discovery, because they make up a well-known class of mechanism-based inhibitors of serine- and cysteine-type hydrolases. In response, we have thoroughly explored the corresponding variant of the Strecker reaction, focusing on catalyst use, solvent, reaction time, and cyanide source. Optimized parameters were combined in a sequential one-pot protocol for which the scope was found to be compatible with library synthesis applications. Product yields ranged from 7 to 90%, and conditions were found to be mild and tolerant to a wide range of functional groups, including moieties that are typically present in druglike molecules.
The Strecker reaction
was originally reported in 1850 as a condensation
between acetaldehyde, ammonia, and hydrogen cyanide.[1] In the same paper, the corresponding reaction product (2-aminopropanenitrile)
was submitted to acidic hydrolysis to produce racemic alanine. During
the decades that followed, the reaction scope was demonstrated to
be significantly broader, allowing the use of structurally diverse
aldehydes and organic amines. As a result, the Strecker reaction became
a standard approach for the synthesis of natural and non-natural α-amino
acids.This reaction is part of a larger group of multicomponent
reactions
(MCRs), in which an initially formed imine-type intermediate reacts
with a nucleophile to deliver a final product.[2] Other well-known representatives include the Mannich condensation,
the Ugi- and Passerini-type reactions, and the so-called “A3
reaction”. MCRs are interesting synthetic tools for library
synthesis, provided their functional group compatibility is sufficient
to allow diversity-oriented approaches.[3,4] In addition,
the combined reaction of more than two molecular building blocks in
one synthetic step is also interesting from a green chemistry perspective.[5]In this framework, it is not surprising
that efforts on methodological
optimization of the Strecker reaction are still ongoing. Relevant
recent examples include the investigation of alternative catalysts,
cyanide sources, and/or reaction protocols to maximize reaction yields.[6−9] Equally importantly, development of enantioselective reaction variants
continues to be pursued, especially with the aim of implementing the
reaction in industrial settings. Currently, the antihypertensive methyldopa
is the only compound that is produced industrially via the Strecker
reaction. Other amino acid derivatives are generally still prepared
by bacterial or enzymatic processes that are inherently enantiospecific.[10,11] A scope aspect of the Strecker reaction that hitherto has largely
been overlooked, however, is the possibility of using N-acylated amine building blocks in the condensation.[12−14] Only a few successful applications were found in which carbamates
are directly condensed with an aldehyde and a cyanide source[15,16] (Figure , entry
A). To the best of our knowledge, however, the same direct condensation
involving a carboxamide instead of a carbamate has not been reported.
In addition, limited documentation can be found in the literature
for a related reaction type involving the use of sulfonamides.[17] The under-representation of such reactions in
the literature is likely to be related to the reduced nucleophilicity
of acylated amines, implying a more sluggish formation of the N-acylimine intermediate of the reaction. Likewise, the
relatively higher Gibbs free energy of an N-acylimine
intermediate (compared to a classical imine) also contributes to the
inherently lower reactivity of acylated amines in Strecker settings.
Generalized strategies to increase rates/yields of reactions involving N-acylimine intermediates have been proposed by, among others,
Petrini and co-workers. A first approach exploits the efficient stabilization
of N-acylimines with para-tolylsulfinic
acid in acidic media (Figure , entry B). The latter delivers a sulfone-type adduct that
can be isolated and, in many cases, precipitates from the reaction
media. In a separate acid- or base-catalyzed step, the sulfone equilibrates
with the corresponding sulfinate and N-acylimine,
which can then be trapped in situ by a variety of nucleophiles, including
the cyanide anion. The latter, however, has only been superficially
explored, again mainly using carbamates, although some individual
examples with benzamides are present.[13,14,18−21] Also, in the corresponding paper by Petrini, only
aromatic aldehydes were found to be reliable reaction partners.[13] Yields decreased with aliphatic aldehydes and
these substrates were not further explored. An alternative but comparable
strategy was reported by Katritzki and co-workers, who stabilized
the N-acylimine intermediate with benzotriazole.
As for the sulfinate-based approach, the benzotriazole adduct is transformed
into the corresponding carbonitrile in a separate step.[22]
Figure 1
Possible approaches to Strecker reactions involving acylimine-type
intermediates: direct condensation of building blocks (entry A) vs
strategies involving stabilization of the N-acylimine
intermediate (entries B and C).
Possible approaches to Strecker reactions involving acylimine-type
intermediates: direct condensation of building blocks (entry A) vs
strategies involving stabilization of the N-acylimine
intermediate (entries B and C).As part of our ongoing research, we were particularly interested
in an efficient methodology allowing library synthesis of N-acylated aminocarbonitriles in which the acyl group is
part of an amide function, preferably in a single synthetic step from
commercially available starting materials. This compound family is
an important class of inhibitors of serine- and cysteine-type proteases.
Therefore, the molecules are of high interest to drug discovery and
to the developing domain of disease biomarker research via activity-based
protein profiling (ABPP). Since the turn of the century, several representatives
of the class have entered clinical practice, including dipeptidyl
peptidase IV-inhibitors vildagliptin (compound 1, Figure ) and saxagliptin
and the cathepsin K-inhibitor odanacatib (2), although
the latter was withdrawn again in 2016 because it increased the risk
of stroke (Figure ). Additional relevant examples include the preclinical inhibitors
of falcipain-2 and several cathepsins.[23−25] In structural terms,
all of these compounds share a pseudo-peptide architecture, in which
the carbonitrile group functions as an electrophilic “warhead”,
capable of forming covalent, reversible bonds with the catalytic machinery
of the target serine or cysteine protease. In this way, the carbonitrile
group strongly contributes to the inhibitor’s target affinity
(Figure ).
Figure 2
Examples of
inhibitors with an N-acylated α-aminonitrile
moiety.[25−27]
Figure 3
Covalent adduct formation
between a carbonitrile warhead and the
catalytic nucleophile of a protease (exemplified for a cysteine protease).
Examples of
inhibitors with an N-acylated α-aminonitrile
moiety.[25−27]Covalent adduct formation
between a carbonitrile warhead and the
catalytic nucleophile of a protease (exemplified for a cysteine protease).Based on its clear potential for library synthesis
of protease
inhibitors, we decided to thoroughly explore variants of the Strecker
reaction involving amide building blocks with the aim of delivering
an optimized, broadly applicable reaction protocol.
Results and Discussion
For the investigation and optimization of experimental parameters
in this study, we relied on the condensation of phenylacetamide, 3-phenylpropanal,
and selected cyanide sources as a general model reaction. It is noteworthy
that we specifically chose not to use a benzaldehyde-type aromatic
aldehyde in this model reaction. While benzaldehyde and its derivatives
generally perform very well in Strecker reactions, 3-phenylpropanal
(in which the carbonyl group is flanked by a methylene group) was
considered to be a more relevant model aldehyde, but also with more
challenging properties under Strecker conditions. The latter is related
to the well-known tendency of methylene-flanked imines to enolize
and undergo aldol-type self-condensation, thereby forming polymeric
products and significantly decreasing yields of the desired carbonitrile.[28] Initial effort aimed at evaluating the possibility
of directly condensating the amide, aldehyde, and cyanide source,
relying on Lewis- or Brønstedt-type acids (Figure , entry A). While such condensations involving
a carboxamide have, to the best of our knowledge, not been published,
two literature examples exist that report a comparable reaction with
a carbamate instead of an amide, relying, respectively, on BF3 catalysis and so-called “partially hydrolyzed titanium
alkoxide” (PHTA).[15] Applying the
published protocols to our own model reaction, however, did not deliver
the expected products. It is noteworthy that even repeating the reactions
from the corresponding publications was not successful in our hands.
Finally, Cu(OTf)2, InCl3, and trifluoroacetic
acid (TFA) were also evaluated exploratorily as alternative catalysts
for the same direct condensation, but these experiments were also
not successful in producing an α-amino carbonitrile.[15,16,29,30]
Figure 4
Overview
of synthetic strategies explored in this study: (A) direct
condensation approaches and (B) approaches involving N-acylimine stabilization.
Overview
of synthetic strategies explored in this study: (A) direct
condensation approaches and (B) approaches involving N-acylimine stabilization.In response, all direct condensation approaches were abandoned,
and we decided to elaborate on strategies based on N-acylimine stabilization with phenylsulfinic acid (Figure , entry B). Two main routes
were investigated in this context: (a) a two-step approach, in which
the sulfone intermediate is prepared separately, isolated, and subsequently
reacted with a cyanide source to obtain the carbonitrile product.
(b) In addition, potentially more efficient protocols were explored
in which all reagents are either mixed in one pot or brought to reaction
in a two-step, “telescoping” manner (Figure , entry B). For systematicity
reasons, it was decided to focus on the two-step approach first.Because it is well documented in the literature, no extensive optimization
effort was deemed required for the first, sulfone-yielding step (Scheme ). The latter is
mostly carried out by mixing an aldehyde, an amide, and a sulfinate
salt with (super-)stoichiometric amounts of formic acid in aqueous
methanol. This reference protocol in our hands delivered the sulfone
in modest but reproducible yields, within ranges reported for other
aldehydes. Variants of this protocol involving a sulfinic acid, an
amide, and an aldehyde have also been reported. Although substantially
less frequently applied, the latter protocol seems to produce comparable
yield ranges in most organic solvents. A test reaction in tetrahydrofuran
(THF), a general solvent with good solubility for many potential reaction
partners, gave a yield comparable to that of the sulfinate-based protocol.
In both cases, the pure sulfone was isolated after flash chromatography.
Scheme 1
Synthetic Preparation of Sulfone Intermediate 9 Relying
on Literature Protocols
Synthetic Preparation of Sulfone Intermediate 9 Relying
on Literature Protocols
Reagents and conditions: (a)
sodium 4-tosylsulfinate (2 equiv), formic acid (20 equiv), methanol/water
(1:2), 5 days, room-temperature (rt) (isolated yield: 43%) or (b)
tosyl-4-sulfinic acid (1.2 equiv), THF, 1 day, and rt (isolated yield:
45%).The second step of the transformation
consists of the formal substitution
of the sulfone part for cyanide, presumably passing via an acylimine
intermediate (Scheme ). A number of reaction protocols involving different potential catalysts,
solvents, and cyanide sources were investigated for this step (Table ). Catalysts were
generally selected based on their reported efficacy in the related
Strecker-type reactions of carbamates or sulfonamides (discussed earlier).
These comprised the Lewis acidsCu(OTf)2, InCl3, BiBr3, and TiO2/rutile.[6,17] The
catalytic role of the latter could consist of activating the sulfone
moiety for elimination and/or increasing the electrophilicity of the
acylimine intermediate. Formic acid was included as a reference Brønstedt
acid with potentially analogous catalytic roles as the Lewis acids.
Although it has only been reported to promote “classical Strecker”
reactions, formic acid is also present in one of the protocols for
sulfone preparation (Scheme ). In this respect, it was decided to anticipate the possibility
of one-step, one-pot protocols (vide infra). In addition, the following
organocatalysts were selected for evaluation: quinine and N-benzylquininium bromide.[18,19,31] The latter has been proposed to increase the reactivity
of acylimine intermediates via, a.o., hydrogen bond activation. The
solvents investigated [N,N-dimethylformamide
(DMF), dimethyl sulfoxide (DMSO), MeOH, acetonitrile (ACN), THF, dichloromethane
(DCM), toluene, and water, water/DMF, MeOH/water] were selected either
based on their status as general reference solvents or because they
had been reported in the related Strecker-type reactions mentioned
earlier. Finally, a number of frequently used cyanide sources were
selected [KCN, trimethylsilyl cyanide (TMSCN), and acetone cyanohydrin],
again based on their use in the related transformations. The argument
of safety was not decisive in this selection, since all of these compounds
are highly toxic, and extreme caution is required while handling them.
Due to the number of possible combinations, we used the same combinations
of cyanide source and catalyst as reported in the literature for Strecker-type
reactions. The yields in Table were determined using a ultra performance liquid chromatography–mass
spectrometry (UPLC–MS) system, relying on calibrated UV-absorption
spectrophotometry.
Scheme 2
Formal Substitution of the Sulfone Moiety for a Cyano
Group
Reagents and conditions: cyanide
source, solvent, catalyst (specified in Table ), rt, and 24 h.
Table 1
Reaction Conditions Investigated for
the Second Step (Cyanide)a
catalyst
no catalyst
no catalyst
BiBr3
BiBr3
InCl3
CuOTf2b
rutile
formic acidd
quinine
N-benzylquininium bromide
catalyst equivalents
0.05
0.05
0.1
0.1
1
0.2
0.05
0.1
cyanide sourcec
KCN
TMSCN
TMSCN
KCN
TMSCN
TMSCN
KCN
TMSCN
KCN
acetone
cyanohydrin
ACN
77%
nd
42%
nd
0%
0%
nd
nd
<4%
56%
THF
82%
0%
0%
nd
<4%
8%
nd
0%
53%
72%
toluene
74%
0%
39%
nd
48%
55%
nd
nd
46%
58%
DCM
79%
0%
67%
53%
<4%
55%
nd
0%
25%
65%
methanol
73%
nd
0%
nd
0%
28%
nd
nd
57%
0%
DMF
81%
nd
0%
nd
0%
0%
nd
0%
71%
76%
DMSO
93%
nd
0%
64%
0%
0%
nd
nd
73%
64%
water/DMF
94%
nd
0%
nd
0%
nd
49%
nd
7%
34%
Reaction
conditions: RT, 0.1M, and
24 h. nd = not determined
Na2SO4 anhydrous
was added to ensure anhydrous conditions. Use of acetone cyanohydrin
(with THF) produced no product.
2 equivalents.
Performed
in a sealed tube.
Formal Substitution of the Sulfone Moiety for a Cyano
Group
Reagents and conditions: cyanide
source, solvent, catalyst (specified in Table ), rt, and 24 h.
Table 2
Screened Reaction Conditions for Sulfone
Formation (as in Scheme )a
entry
reaction conditionsb
catalyst
solvent
time
yield (9)
1.1 equiv
0.05 equiv
1
A
rutile
water/DMF (99:1)
3 days
trace amountsc
2
A
indium(III) chloride
toluene
8 days
0%
3
A
bismuth(III) bromide
DCM
8 days
trace amountsc
4
A
copper(II) triflate
DCM
8 days
trace amountsc
5
A
N-benzylquininium bromide
DMF
8 days
0%
6
A
quinine
DMSO
8 days
0%
7
B
bismuth(III) bromide
DCM
1 day
50%d
8
B
rutile
water/DMF (99:1)
7 days
0%
9
B
quinine
DMSO
7 days
25%d
Molarity
0.12 M.
From Scheme .
Detected by LC–MS.
Isolated yield.
Reaction
conditions: RT, 0.1M, and
24 h. nd = not determinedNa2SO4 anhydrous
was added to ensure anhydrous conditions. Use of acetone cyanohydrin
(with THF) produced no product.2 equivalents.Performed
in a sealed tube.A main
observation when studying the data in Table is that the reaction protocol involving
KCN as the cyanide source and no catalyst addition is clearly optimal,
with yields of up to 94% and very broad solvent tolerability. Conversely,
not even trace amounts of the desired product are formed in three
exploratory experiments where TMSCN was used instead of KCN under
otherwise identical conditions. Surprisingly, however, the selected
Lewis acids (but not the Brønstedt-type formic acid) are, in
some cases, instrumental to activate TMSCN as a cyanide source. Nonetheless,
even the best yields under these conditions remain considerably lower
than those with the KCN/uncatalyzed protocol. Also, the efficiency
of the catalyst seems to be strongly solvent dependent. Polar solvents
with strong Lewis acid solvation properties are detrimental to yields
in these reactions. More specifically, solvation of the Lewis acidic
metal cation can reasonably be expected to prevent the latter from
interacting with the other reactants and from activating them for
the desired condensation reaction. A notable exception is Cu(OTf)2, which is still capable of promoting the conversion in methanol
(albeit with only 28% yield). For the sake of completeness, the combination
of KCN with Lewis acids was also superficially explored. The low yields
that were obtained in experiments with BiBr3/KCN, however,
were the decisive reason for not exhaustively exploring this possibility.
In the same framework, the rutile/KCN/aqueous DMF was also investigated
as published earlier but again found to be less performant than the
corresponding uncatalyzed version. Overall, these findings suggest
that considerable optimization may be possible for the published Lewis
acid-catalyzed Strecker-type reactions involving carbamates or sulfonamides.
To the best of our knowledge, these were never compared with uncatalyzed
conditions side by side. Finally, the two organocatalyst protocols
that were included involved either KCN or acetone cyanohydrin as the
cyanide sources. Similar to what was already observed for the Lewis
and Brønstedt acids, protocols involving organocatalysts were
not able to deliver higher product yields. Nonetheless, both are clearly
still superior to the Lewis acid-catalyzed protocols. Importantly,
also, the protocol involving quinine catalysis by Reingruber et al.
was published in the framework of enantioselective synthesis.[19] In case sufficiently high enantiomeric excess
(ee) can be obtained with this protocol (vide infra), it could be
an argument to use this protocol for library synthesis of biologically
active compounds.Effort was then made toward combining both
reaction steps (sulfone
formation and carbonitrile formation) into a one-step, one-pot protocol.
Based upon the above data, the most promising one-pot protocol seemed
to be stirring a mixture of aldehyde, amide, KCN, and 4-tolylsulfinic
acid in THF at room temperature without catalysts. However, no target
product could be retrieved under these conditions, potentially explained
by the occurrence of undesired competing reactions such as cyanohydrin
formation and aldol-type condensation that prevent the formation of
the desired product. In addition, the best-performing protocols involving
a Lewis acid or an organocatalyst from Table were also explored (Table , entries 1–9). Since, however, their potential effect
on sulfone formation had never been reported, experiments were first
run without the addition of a cyanide source, and sulfone formation
was used as the read-out. None of the conditions in which the catalysts
were combined with tolylsulfinate/formic acid was found to produce
relevant amounts of the desired sulfone (based upon LC–MS analysis
of the reaction mixture) (Table , entry 1–5). It is, however, unclear whether
the absence of sulfone formation is indeed caused by the catalyst
or, alternatively, by the corresponding reaction media (which are
invariably different from the aqueous methanol used for the sulfinate-based
condensation in Scheme ). Given the absence of promising preliminary results, no eventual
optimization measures were investigated. In addition, combinations
of 4-tolylsulfinic acid with an organocatalyst or a Lewis acid were
evaluated. (Table , entries 7–9). Of the two Lewis acids that were evaluated
(entry 7 and 8), the presence of bismuth(III) bromide and the use
of DCM as a solvent had a yield comparable with the reference reaction
in Scheme . Rutile/aqueous
DMF, however, was found not to promote sulfone formation. Finally,
the combination of 4-tolylsulfinic acid with organocatalyst quinine
in DMSO (entry 9) performed well in the substitution step.Molarity
0.12 M.From Scheme .Detected by LC–MS.Isolated yield.In response, a telescoping protocol was devised, in which the aldehyde,
the amide, and 4-tolylsulfinic acid in THF are allowed to react until
chromatography indicated the reaction to be complete or stagnant,
followed by addition of KCN to initiate the second step. The telescoping
reaction was found to be successful, leading to the formation of (11) in an overall yield of 53%, but requiring three days for
the first part and 7 days for the second part (Figure , (11)). The same telescoping
reaction protocol was also applied on a larger scale (involving 6.5
mmol of the limiting reagent phenylpropanal) with a roughly comparable
overall yield (41%). The protocol was subsequently applied to other
aldehydes and carboxamides to define the scope of the reaction specifically
considering the functional group compatibility of the reaction. A
set of 14 additional compounds was synthesized (Figure ) with commercially available reagents possessing
moieties that are common in druglike and peptide-like molecules. Building
blocks with unprotected nucleophilic moieties (e.g., free amines)
were not considered, because they could interfere with both steps
of the transformation. We aimed at obtaining the highest yields for
each target molecule by adjusting the timing of cyanide addition based
on LC–MS samples of the reaction. We observed highly variable
reaction times of both parts of the telescoped reaction. One more
adaptation was necessary for the cases where an acidic proton is present
after the first step (Figure , (22–24)); potassium carbonate
was added together with potassium cyanide to capture this proton.
Molecules (11), (14), and (15) were obtained in good yields in 10–11 days; (13) was obtained with a comparable yield in four days of reaction time.
Compound (12) was obtained in excellent yield, but the
reaction time was 12 days. The adduct formation took eight days, probably
due to the steric hindrance caused by the two phenyl moieties. The
telescoping protocol is compatible with carbamate-protected amines,
as shown with (16), (17), (20), and (21). In addition, Fmoc-protecting groups are
also tolerated, a demonstration that the reaction conditions are mild
enough to tolerate both acid- and base-labile protecting groups with
acceptable yields. The reaction rates for (16) and (21) were fast when compared with (17) and (20): 3 and 11 days, respectively. Ketones are another interesting
building block to explore; these molecules allow the formation of
α,α-disubstituted amino acids. Thus, two of them (18) and (19) were produced; the yields were the
lowest and the reaction times were the longest in the set. Finally,
we explored the scope with succinamic acid, which contains a free
carboxylate, and two building blocks with a pyridinyl moiety, nicotinamide,
and 3-pyridinecarboxaldehyde. The three reactions needed the addition
of potassium carbonate for the second reaction to occur. Compound
(22) was obtained after 6 days; (23) and
(24) were obtained in 6 and 4 days, respectively. During
the expansion of the reaction scope, we also observed that some intermediate
adducts were not stable when its isolation was attempted; similar
observations were reported in the literature for other compounds.[32,33]
Figure 5
Library
of compounds synthesized and respective yields.
Library
of compounds synthesized and respective yields.Overall, the reaction yields obtained for compounds 11–24 are moderate to good. They can be considered
acceptable in most cases when compared to the alternative synthetic
approach (Strecker reaction, followed by N-acylation).
The latter approach involves two reactions and, potentially, two purification
steps. Furthermore, the classical Strecker reaction is characterized
by highly variable yields. Nevertheless, the significant reaction
time for the telescoping reaction, ranging from 3 to 14 days, was
a point that we clearly wanted to optimize further. The possibility
to reduce reaction times by increasing the temperature was investigated.
This was originally not considered, taking into account the oxidation
sensitivity of aldehydes and the possibility that undesired side reactions
could also be promoted by increasing the temperature. To try the hypothesis
of optimization with higher temperatures, (11) and (12) were resynthesized at 45 °C using a similar procedure,
only cooling it down to add KCN. The yield for (12) decreased
to 22%, possibly due to oxidation of benzaldehyde or benzoin formation.
The reaction time also decreased considerably, from 12 to 3 days and
4 h. On the other hand, (11) not only had the reaction
time reduced from 10 to 3 days, the yield also increased from 53 to
77%. These observations indicate that it is possible to further optimize
each reaction and find the optimal temperature on a case-by-case basis
(e.g., temperature and solvent).In addition, we also attempted
to further increase the atom efficiency
of the process by using methylsulfinic acid, the smallest sulfinic
acid possible, instead of tolylsulfinic acid. The reaction with (11) at room temperature was successful with comparable yield
(43%) and reaction time (10 days).Finally, the stereochemical
aspects of the reaction were preliminarily
probed, relying on chiral chromatography with (11), (13), and (21). Stereoselective reactions are
of particular interest for the synthesis of drugs because the individual
stereoisomers of a drug can have differing biological properties.
Use of a specific stereoisomer can therefore be desirable, to reduce
the probability of side effects or toxicity. As expected, in the absence
of chiral catalysts or auxiliaries during their synthesis, (11) and (13) were found to occur as racemates.
Analogously, the use of a chiral amide building block in the synthesis
of (21) did not lead to diastereoselectivity, while the
absolute configuration of the original stereocenter was maintained.
Finally, quinine’s potential as an enantioselective catalyst
was investigated, taking into account the earlier promising results
of Reingruber and co-workers in carbamate condensations.[19] This catalyst was already used during the screening
(Tables and 2) and it allowed the reaction to proceed in acceptable
yields. Two protocols were tried: (a) adding the quinine initially
and performing the telescoping reaction at −10 °C and
adding the quinine with the cyanide and performing the cyanide substitution
step at −10 °C. Only the second protocol seemed to yield
the product with longer reaction times, but the reaction was found
not to lead to enantiomeric excess of one optical isomer.
Conclusions
In summary, we have investigated diverse parameters for the reaction,
solvent, catalyst, and temperature, and developed a simple telescoping
reaction protocol that has the potential to assemble racemic, peptide-like N-acylated α-aminonitriles. The developed protocol
has significant functional group compatibility and can be used for
library synthesis of protease inhibitors. Further optimization of
the general protocol that we have delivered seems difficult, but fine-tuning
of reaction parameters on a case-by-case basis could be worthwhile,
for example, in upscaling conditions for a particular molecule of
interest. As shown, temperature is one of the factors that seems to
have different optima for different reactant combinations. Other parameters
might follow the same trend such as solvents.Future work will
include alternative acylimine-stabilizing strategies
other than sulfone-adduct formation (such as benzotriazole-adduct
formation, reported by Katritzky and co-workers), attempts to induce
enantioselectivity with other catalysts, or use of a sulfonated solid-phase
catalyst to facilitate product purification and enable catalyst recycling.[22,34,35]
Experimental Section
Caution! Acetone cyanohydrin, TMSCN, and KCN are extremely
toxic and should be handled with caution in a well-ventilated fumehood.
Cyanides in acidic pH produce HCN, an extremely toxic gas. The aqueous
waste was brought to basic pH with a NaOH solution (1M) and then quenched
with industrial-grade bleach (sodium hypochlorite 12%). The glassware
and material in contact with cyanides were first washed with bleach.
Bleach should not be mixed with acidic solutions; chlorine gas is
formed, which is also extremely toxic.
General Information
Commercial reagents and solvents were used as received. All thin-layer
chromatography experiments were performed using precoated silica gel
60 F254 plates. The LC–MS analysis was performed on a Waters
UPLC–MS system equipped with a TUV and QDa detector; the column
used is an Acquity UPLC BEH C18 (1.7 μm, 2.1 × 50 mm).
Flash chromatography separations were carried out using a Biotage
Isolera One purification system with silica gel columns (normal or
reverse phase) from Büchi or Biotage. Preparative HPLC purifications
were carried out using a Waters HPLC system equipped with a UV and
MS detector and using an XBridge Prep C18 5 μm OBD column (19
×100 mm). Melting points were measured on a Büchi Melting
Point M-560. Attenuated total reflectance Fourier transform infrared
(ATR-FTIR) spectra were recorded on a Bruker Alpha Platinium ATR.
(Note: the nitrile band is missing in some spectra (low
signal-to-noise ratio) for some compounds, which is a known phenomenon
observed with ATR FTIR due to the high absorbance of diamond in that
region.)[36]1H and 13C{1H} nuclear magnetic resonance (NMR) spectra were recorded
on a Bruker Ultrashield 400 MHz NMR spectrometer (operating at 400
and 101 MHz, respectively) in CDCl3, acetone-d6, MeOD-d4, or DMSO-d6, and
analyzed using MestreNova software. The chemical shifts (δ)
reported are given in parts per million (ppm). The signal splitting
patterns were described as s = singlet, d = doublet, t = triplet,
q = quartet, p = pentuplet, dd = doublet of doublet, dt = doublet
of triplet, td = triplet of doublet, tt = triplet of triplet, ddd
= doublet of doublet of doublet, br = broad, and m = multiplet, with
coupling constants (J) in hertz (Hz). High-resolution
mass spectra (HRMS) were acquired using a Q-TOF II instrument (Waters,
Manchester, U.K.) mass spectrometer. The MS was calibrated prior to
use with a 0.1% H3PO4 solution.
General Method
for Synthesis of Phenyl-N-(3-phenyl-1-tosylpropyl)acetamide
(A)
Preparation is based on the literature.[19]A mixture of 2-phenylacetamide (5 g, 37.0
mmol) and sodium 4-toluenesulfinate (13.18 g, 74.0 mmol) was suspended
in a solution of methanol in water (1:2, 50 mL). Afterward, 3-phenylpropanal
(7.37 mL, 55.5 mmol) was added in one portion, followed by formic
acid (27.9 mL, 740 mmol). The resulting mixture was allowed to stir
for 5 days at room temperature. The resulting white precipitate was
filtered off and washed with water and diethyl ether to yield 2-phenyl-N-(3-phenyl-1-tosylpropyl)acetamide (6.3375 g, 15.55 mmol,
42% yield) as a white solid.1H NMR (400 MHz, CDCl3) δ 7.59 (d, J = 8.2 Hz, 2H), 7.36–7.18
(m, 8H), 7.14–7.04
(m, 4H), 5.87 (d, J = 10.4 Hz, 1H), 5.24 (td, J = 10.7, 3.2 Hz, 1H), 3.32 (s, 2H), 2.67 (t, J = 7.5 Hz, 2H), 2.55 (dtd, J = 14.0, 7.7, 3.2 Hz,
1H), 2.41 (s, 3H), 1.98 (ddt, J = 18.3, 11.0, 6.9
Hz, 1H); 13C{1H} NMR (101 MHz, CDCl3) δ 170.2, 145.3, 140.00, 133.8, 133.4, 129.9, 129.4, 129.2,
129.1, 128.8, 128.5, 127.8, 126.6, 68.5, 43.4, 31.7, 28.5, 21.9.
General Method for Synthesis of Phenyl-N-(3-phenyl-1-tosylpropyl)acetamide
(B)
A mixture of 2-phenylacetamide (0.216 g,
1.601 mmol), 3-phenylpropanal (0.213 mL, 1.601 mmol), and 4-toluenesulfinic
acid (0.3 g, 1.921 mmol) was dissolved in THF (8 mL). The solution
was stirred for 1 day at room temperature. Then, extraction was performed
with ethyl acetate and water, the organic phase was washed with brine,
dried with anhydrous sodium sulfate, and the solvent was evaporated.
The obtained off-white solid was purified by normal-phase flash chromatography
to yield 2-phenyl-N-(3-phenyl-1-tosylpropyl)acetamide
(0.290 g, 0.712 mmol, 44.5% yield) as a white solid.1H NMR (400 MHz, DMSO-d6) δ 9.00 (d, J = 9.6
Hz, 1H), 7.59–7.52 (m, 2H), 7.32–7.17 (m, 8H), 7.14–7.06
(m, 4H), 5.06–4.93 (m, 1H), 3.46–3.27 (m, 2H), 2.73–2.60
(m, 1H), 2.54–2.42 (m, 1H), 2.35–2.24 (m, 1H), 2.04–1.89
(m, 1H); 13C{1H} NMR (101 MHz, DMSO) δ
170.1, 144.4, 140.1, 135.4, 133.4, 129.5, 129.0, 128.8, 128.4, 128.3,
128.1, 126.4, 126.1, 68.2, 41.7, 30.5, 28.1, 21.1.
General Method
for Synthesis of Phenyl-N-(3-phenyl-1-tosylpropyl)acetamide
(“Screening”)
Benzene acetamide (1 equiv),
sodium 4-toluenesulfinate, or 4-toluenesulfinic acid (2 equiv), and
the catalyst (0.05 equiv) were suspended in a solvent (0.122 M). Phenylpropionaldehyde
(1.5 equiv) was added and the mixture was stirred at room temperature.
The reaction was probed by thin layer chromatography (TLC) or LC–MS
every 24 h. In the cases where the product was isolated, extraction
with ethyl acetate and water was performed, and flash chromatography
was performed to yield the pure product.
General Method for Synthesis
of N-(1-Cyano-3-phenylpropyl)-2-phenylacetamide
(Screening)
The cyanide source (2 equiv) was added to a solution
of 2-phenyl-N-(3-phenyl-1-tosylpropyl)acetamide (1
equiv) and the catalyst (0.1 equiv) in a solvent (0.122 M). The reaction
was stirred for 24 h, when a sample for LC–MS was prepared
and measured.
Preparation of 4-Tolylsulfinic acid
Sodium 4-tolylsulfinate
was dissolved partially in a superstoichiometric amount of a 1M HCl
aqueous solution. The suspension was extracted twice with ethyl acetate,
and the organic phases were combined and dried with sodium sulfate
anhydrous. The mixture was filtered, and the solvents were evaporated
to yield a white powder, which was stored at −20 °C to
avoid degradation.
Method for Synthesis of N-(1-Cyano-3-phenylpropyl)-2-phenylacetamide
with Methylsulfinic Acid
Methylsulfinic acid was prepared
by dissolving the required amount of sodium methylsulfinate (1 equiv)
in HCl in dioxane (1 equiv). A suspension formed and it was added
to the reaction.
General Method Used for “Library Synthesis”
An amide (1.1 equiv) and an aldehyde (1 equiv) were dissolved in
the amount of THF required to obtain an aldehyde concentration of
0.165 M. 4-Tolylsulfinic acid (1.3 equiv) was added and the mixture
was stirred for a certain period of time (Rt1) at room temperature.
Once the starting materials were consumed or the reagents and intermediate
quantities seemed to be stable, KCN (1.1 equiv) was added to the reaction
and it was stirred for a certain period of time (Rt2) at room temperature.
In the case of compounds (22), (23), and
(24), K2CO3 (1 equiv) was added.
Once the reaction was finished or was stable, filtration and washing
with ethyl acetate were performed to remove the precipitate in some
cases. Next, an extraction (ethyl acetate and water) was performed,
the organic phase was dried with sodium sulfate, filtered, and the
solvents were removed by evaporation under reduced pressure. The crude
was then purified by flash chromatography and/or preparative TLC (gradient
of n-heptane and ethyl acetate). In some cases, the
compounds were further purified by preparative high performance liquid
chromatography (HPLC) (gradient of water with formic acid and methanol).
N-(1-Cyano-3-phenylpropyl)-2-phenylacetamide
(11)
This product was synthesized several times
using different conditions. (1) In case the general library synthesis
method was used, the reaction time was 10 days (=3 + 7 days) and the
isolated yield was 53%. (2) In case the general library synthesis
method was run at 45 °C (instead of ambient temperature), the
reaction time was three days (=1 + 2 days) and the isolated yield
was 77%. (3) In case the library synthesis protocol was used with
methylsulfinic acid (instead of tolylsulfinic acid), the reaction
time was 10 days (=6 + 4 days) and isolated yield was 43%. (4) Finally,
the library synthesis method was scaled up. According to the general
protocol, 6.5 mmol (872 mg) phenylpropanal, 7.15 mmol (943.8 mg) phenylacetamide,
8.45 mmol (1.45 g) tolylsulfinic acid, and 7.15 mmol (465 mg) potassium
cyanide were used. The reaction time was 10 days (=3 + 7 days) and
the isolated yield was 41% (2.7 mmol, 705 mg); white powder, mp 119
°C (degradation); 1H NMR (400 MHz, CDCl3) δ 7.44–7.21 (m, 8H), 7.17–7.13 (m, 2H), 5.54
(d, J = 8.6 Hz, 1H), 4.88 (dt, J = 8.5, 7.3 Hz, 1H), 3.60 (s, 2H), 2.77–2.71 (m, 2H), 2.15–1.98
(m, 2H); 1H NMR (400 MHz, DMSO-d) δ 8.95 (d, J = 7.5 Hz, 1H),
7.38–7.13 (m, 11H), 4.63 (q, J = 7.5 Hz, 1H),
3.50 (s, 2H), 2.66 (t, J = 7.9 Hz, 2H), 2.15–1.91
(m, 2H); 13C{1H} NMR (101 MHz, DMSO-d) δ 170.3, 139.9, 135.5,
129.0, 128.2, 126.6, 126.2, 119.3, 41.7, 39.5, 33.2, 30.9; HRMS (ESI) m/z: [M + H]+ calcd for C18H19N2O 279.1492, found 279.1499; UPLC–MS
(generic method) 1.80 min, m/z 279.2
[M + H]+, 277.2 [M – H]−; IR (ATR-FTIR)
ν (cm–1): 3337, 3254, 3060, 3027, 2923, and
2856.
A mixture
of 2-phenylacetamide (0.1 g, 0.74 mmol), 3-phenylpropanal (98 μl,
0.74 mmol), and 4-toluenesulfinic acid (0.150 g, 0.962 mmol) was dissolved
in THF (4.48 mL). The solution was stirred for 14 h at 45 °C
(heating source: stirrer plate and Asynt DrySyn). Once the starting
materials were consumed or the reagents and intermediate quantities
seemed to be stable, the reaction was cooled to room temperature,
KCN (52 mg, 0.814 mmol) was added to the reaction, and it was stirred
at 45 °C for two days (heating source: stirrer plate and Asynt
DrySyn). Once the reaction was finished or was stable, an extraction
(ethyl acetate/water) was performed, the organic phase was dried with
sodium sulfate, filtered, and the solvents were removed by evaporation
under reduced pressure. The crude was then purified by flash chromatography
to obtain the product in 77% yield.In the case of compound
(12), the protocol was similar, with the only difference
in the time of reaction, 4 h for the first part and three days for
the second. After purification, the product was obtained in 53% yield.
Method for Synthesis of N-(1-Cyano-3-phenylpropyl)-2-phenylacetamide
with Quinine
Two different protocols were tried, but only
one allowed us to obtain the product. The protocol where quinine was
added at the beginning and the reaction was maintained at −10
°C all of the time was not successful; thus, it will not be described
in detail.The protocol where quinine was added with potassium
cyanide and the reaction was cooled down to −10 °C yielded
a racemic mixture of the product.
Chiral Chromatography
Certain reaction conditions could
induce enantioselectivity to a certain degree. Thus, four compounds
were analyzed by chiral chromatography.
Chiral SCF
A Waters
Thar SFC system equipped with a
Daicel Chiralpak IB column (5 μm particle size, 4.6 × 250
mm) was used. An isocratic method was used (5% methanol/95% supercritical
CO2, 3 mL/min flow, 40 min of elution at 25 °C). A
chiral standard was synthesized to compare the retention time (see
the Supporting Information); the separation
of compound (11) was not optimal but sufficient to notice
that the reaction is not enantioselective.
Chiral HPLC
Compounds
(9), (11), (13), and (21) were analyzed by chiral
chromatography to confirm that the reaction is not enantioselective.
A Waters HPLC system equipped with a Jasco X-LC 3195CD detector, a
PDA detector, an MS detector, and a Daicel Chiralpak IA column (5
μm particle size, 4.6 × 150mm) was used. The gradient used
was n-hexane/isopropanol.
Authors: Jon Bondebjerg; Henrik Fuglsang; Kirsten Rosendal Valeur; John Pedersen; Lars Naerum Journal: Bioorg Med Chem Lett Date: 2006-05-02 Impact factor: 2.823
Authors: Abdul Majeed Seayad; Balamurugan Ramalingam; Kazuhiko Yoshinaga; Takushi Nagata; Christina L L Chai Journal: Org Lett Date: 2010-01-15 Impact factor: 6.005
Authors: Paul D Greenspan; Kirk L Clark; Scott D Cowen; Leslie W McQuire; Ruben A Tommasi; David L Farley; Elizabeth Quadros; David E Coppa; Zengming Du; Zheng Fang; Huanghai Zhou; John Doughty; Karen T Toscano; Andrew M Wigg; Siyuan Zhou Journal: Bioorg Med Chem Lett Date: 2003-11-17 Impact factor: 2.823