Literature DB >> 33490544

Complete Chloroplast Genome Sequence Of Prunus Davidiana (Rosaceae).

Xin Zhang1, Jie Yan1, Qin Ling1, Lu Fan1, Manrang Zhang1.   

Abstract

Prunus davidiana is a Chinese wild peach species belonging to the family Rosaceae. In this study, we first assembled the complete chloroplast (cp) genome of P. davidiana by Illumina paired-end reads data, then carried out phylogenetic analysis. The P. davidiana cp genome was 158,055 bp, containing a large single copy region (LSC) of 86,248 bp and a small single copy region (SSC) of 19,047 bp separated by a pair of inverted repeats (IRs) of 26,380 bp. The cp genome contained 131 genes, including 86 protein-coding genes, 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that P. davidiana is closely related to P. mongolica.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Prunus davidiana; Rosaceae; chloroplast genome; phylogenetic analysis

Year:  2018        PMID: 33490544      PMCID: PMC7801015          DOI: 10.1080/23802359.2018.1501325

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  3 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  Dynamics of soil nitrogen fractions and their relationship with soil microbial communities in two forest species of northern China.

Authors:  Dong Liu; Yimei Huang; Hao Yan; Yueli Jiang; Tong Zhao; Shaoshan An
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

3.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.