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Literature DB >> 33490540

The complete mitogenome of Caridina indistincta 'sp. A' (Decapoda: Atyidae).

Abstract

A complete mitochondrial genome sequence was determined for a member of the Caridina indistincta species complex known as C. indistincta 'sp. A'. The 15,461 bp sequence (GenBank: MH189850) was obtained via genome skimming, and contains 13 protein coding genes, 22 tRNA genes, 2 rRNA genes, and a 646 bp control region arranged in the pancrustacean ground pattern. Caridina indistincta sp. A is a freshwater macroinvertebrate important for ecosystem health monitoring in Australia and this reference will be a useful resource for metabarcoding and eDNA studies.

Entities: Disease Gene Species

Keywords: Atyidae; Freshwater shrimp; MiSeq; genome skimming; mitochondrial genome

Year: 2018 PMID： 33490540 PMCID： PMC7800972 DOI： 10.1080/23802359.2018.1467241

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

7 in total

7. Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda).

Authors: Mun Hua Tan; Han Ming Gan; Yin Peng Lee; Gary C B Poore; Christopher M Austin
Journal: PeerJ Date: 2017-03-01 Impact factor: 2.984

7 in total

The complete mitogenome of Caridina indistincta 'sp. A' (Decapoda: Atyidae).

1. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

2. The taxonomic feedback loop: symbiosis of morphology and molecules.

3. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

4. Complete mitochondrial genome of Caridina nilotica gracilipes.

5. MITOS: improved de novo metazoan mitochondrial genome annotation.

6. NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

7. Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda).