Literature DB >> 17148149

The taxonomic feedback loop: symbiosis of morphology and molecules.

Timothy J Page1, Satish C Choy, Jane M Hughes.   

Abstract

Here, we relate the ongoing taxonomic story of a species complex of problematic, cryptic Australian freshwater shrimp (Atyidae; Caridina) to highlight the relative strength and utility of different taxonomic methods in assessing species boundaries. We used popular 'DNA barcode' gene fragments cytochrome c oxidase 1 and 16S ribosomal DNA. We then assessed the morphological attributes of these specimens and developed an identification key to complement the molecular results, and conclude that, despite occasionally strident arguments in favour of either molecular or morphological taxonomy, the two are inseparably linked and form parts of a greater whole.

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Year:  2005        PMID: 17148149      PMCID: PMC1626211          DOI: 10.1098/rsbl.2005.0298

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  7 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species.

Authors:  Paul D N Hebert; Sujeevan Ratnasingham; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-08-07       Impact factor: 5.349

3.  DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades.

Authors:  Mark Blaxter; Ben Elsworth; Jennifer Daub
Journal:  Proc Biol Sci       Date:  2004-05-07       Impact factor: 5.349

4.  The promise of a DNA taxonomy.

Authors:  Mark L Blaxter
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

5.  galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.

Authors:  R Henrik Nilsson; Karl-Henrik Larsson; Björn M Ursing
Journal:  Bioinformatics       Date:  2004-02-19       Impact factor: 6.937

6.  A comprehensive and validated molecular taxonomy of beaked whales, family Ziphiidae.

Authors:  M L Dalebout; C S Baker; J G Mead; V G Cockcroft; T K Yamada
Journal:  J Hered       Date:  2004 Nov-Dec       Impact factor: 2.645

7.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

  7 in total
  8 in total

1.  Beyond barcodes: complex DNA taxonomy of a South Pacific Island radiation.

Authors:  Michael T Monaghan; Michael Balke; Joan Pons; Alfried P Vogler
Journal:  Proc Biol Sci       Date:  2006-04-07       Impact factor: 5.349

2.  Revision of the freshwater genus Atyaephyra (Crustacea, Decapoda, Atyidae) based on morphological and molecular data.

Authors:  Magdalini Christodoulou; Aglaia Antoniou
Journal:  Zookeys       Date:  2012-10-19       Impact factor: 1.546

Review 3.  Aquatic Insects in Eastern Australia: A Window on Ecology and Evolution of Dispersal in Streams.

Authors:  Jane M Hughes; Joel A Huey; Alison J McLean; Olivier Baggiano
Journal:  Insects       Date:  2011-10-20       Impact factor: 2.769

4.  The complex evolutionary history and phylogeography of Caridina typus (Crustacea: Decapoda): long-distance dispersal and cryptic allopatric species.

Authors:  Samuel C Bernardes; Almir R Pepato; Thomas von Rintelen; Kristina von Rintelen; Timothy J Page; Hendrik Freitag; Mark de Bruyn
Journal:  Sci Rep       Date:  2017-08-22       Impact factor: 4.379

5.  Nucleic acids-based tools for ballast water surveillance, monitoring, and research.

Authors:  John A Darling; Raymond M Frederick
Journal:  J Sea Res       Date:  2018-03       Impact factor: 2.108

6.  The complete mitogenome of Caridina indistincta 'sp. A' (Decapoda: Atyidae).

Authors:  Daniel J Schmidt
Journal:  Mitochondrial DNA B Resour       Date:  2018-08-16       Impact factor: 0.658

Review 7.  Looking back on a decade of barcoding crustaceans.

Authors:  Michael J Raupach; Adriana E Radulovici
Journal:  Zookeys       Date:  2015-11-23       Impact factor: 1.546

8.  Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera.

Authors:  María P Martín; Pablo P Daniëls; David Erickson; John L Spouge
Journal:  PLoS One       Date:  2020-08-19       Impact factor: 3.240

  8 in total

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