Literature DB >> 3349024

Sequential 1H NMR assignments and secondary structure of hen egg white lysozyme in solution.

C Redfield1, C M Dobson.   

Abstract

Assignments for 1H NMR resonances of 121 of the 129 residues of hen egg white lysozyme have been obtained by sequence-specific methods. Spin systems were identified with phase-sensitive two-dimensional (2-D) correlated spectroscopy and single and double relayed coherence transfer spectroscopy. For key types of amino acid residues, particularly alanine, threonine, valine, and glycine, complete spin systems were identified. For other residues a less complete definition of the spin system was found to be adequate for the purpose of sequential assignment. Sequence-specific assignments were achieved by phase-sensitive 2-D nuclear Overhauser enhancement spectroscopy (NOESY). Exploitation of the wide range of hydrogen exchange rates found in lysozyme was a useful approach to overcoming the problem of spectral overlap. The sequential assignment was built up from 21 peptide segments ranging in length from 2 to 13 residues. The NOESY spectra were also used to provide information about the secondary structure of the protein in solution. Three helical regions and two regions of beta-sheet were identified from the NOESY data; these regions are identical with those found in the X-ray structure of hen lysozyme. Slowly exchanging amides are generally correlated with hydrogen bonding identified in the X-ray structure; a number of exceptions to this general trend were, however, found. The results presented in this paper indicate that highly detailed information can be obtained from 2-D NMR spectra of a protein that is significantly larger than those studied previously.

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Year:  1988        PMID: 3349024     DOI: 10.1021/bi00401a020

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  31 in total

1.  A refined solution structure of hen lysozyme determined using residual dipolar coupling data.

Authors:  H Schwalbe; S B Grimshaw; A Spencer; M Buck; J Boyd; C M Dobson; C Redfield; L J Smith
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

2.  Positive theta-angles in proteins by nuclear magnetic resonance spectroscopy.

Authors:  S Ludvigsen; F M Poulsen
Journal:  J Biomol NMR       Date:  1992-05       Impact factor: 2.835

3.  Conformational distributions of denatured and unstructured proteins are similar to those of 20 × 20 blocked dipeptides.

Authors:  Kwang-Im Oh; Young-Sang Jung; Geum-Sook Hwang; Minhaeng Cho
Journal:  J Biomol NMR       Date:  2012-03-18       Impact factor: 2.835

4.  Band-selective editing of exchange-relay in protein-water NOE experiments.

Authors:  G Melacini; R Boelens; R Kaptein
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

5.  Temperature dependence of 1H chemical shifts in proteins.

Authors:  N J Baxter; M P Williamson
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

6.  Heterologous expression of hen egg white lysozyme and resonance assignment of tryptophan side chains in its non-native states.

Authors:  Christian Schlörb; Katrin Ackermann; Christian Richter; Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

7.  Thermally induced fibrillar aggregation of hen egg white lysozyme.

Authors:  Luben N Arnaudov; Renko de Vries
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

8.  Stability of the thrombolytic protein fibrolase: effect of temperature and pH on activity and conformation.

Authors:  D Pretzer; B S Schulteis; C D Smith; D G Vander Velde; J W Mitchell; M C Manning
Journal:  Pharm Res       Date:  1991-09       Impact factor: 4.200

9.  Chemical exchange in two dimensions in the 1H NMR assignment of cytochrome c.

Authors:  Y Q Feng; A J Wand; H Roder; S W Englander
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

10.  Structure, thermostability, and conformational flexibility of hen egg-white lysozyme dissolved in glycerol.

Authors:  T Knubovets; J J Osterhout; P J Connolly; A M Klibanov
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

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