Literature DB >> 33465075

Automatic classification of mice vocalizations using Machine Learning techniques and Convolutional Neural Networks.

Marika Premoli1, Daniele Baggi2, Marco Bianchetti2, Alessandro Gnutti2, Marco Bondaschi2, Andrea Mastinu1, Pierangelo Migliorati2, Alberto Signoroni2, Riccardo Leonardi2, Maurizio Memo1, Sara Anna Bonini1.   

Abstract

Ultrasonic vocalizations (USVs) analysis is a well-recognized tool to investigate animal communication. It can be used for behavioral phenotyping of murine models of different disorders. The USVs are usually recorded with a microphone sensitive to ultrasound frequencies and they are analyzed by specific software. Different calls typologies exist, and each ultrasonic call can be manually classified, but the qualitative analysis is highly time-consuming. Considering this framework, in this work we proposed and evaluated a set of supervised learning methods for automatic USVs classification. This could represent a sustainable procedure to deeply analyze the ultrasonic communication, other than a standardized analysis. We used manually built datasets obtained by segmenting the USVs audio tracks analyzed with the Avisoft software, and then by labelling each of them into 10 representative classes. For the automatic classification task, we designed a Convolutional Neural Network that was trained receiving as input the spectrogram images associated to the segmented audio files. In addition, we also tested some other supervised learning algorithms, such as Support Vector Machine, Random Forest and Multilayer Perceptrons, exploiting informative numerical features extracted from the spectrograms. The performance showed how considering the whole time/frequency information of the spectrogram leads to significantly higher performance than considering a subset of numerical features. In the authors' opinion, the experimental results may represent a valuable benchmark for future work in this research field.

Entities:  

Year:  2021        PMID: 33465075      PMCID: PMC7815145          DOI: 10.1371/journal.pone.0244636

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  21 in total

Review 1.  Ultrasonic vocalisation emitted by infant rodents: a tool for assessment of neurobehavioural development.

Authors:  I Branchi; D Santucci; E Alleva
Journal:  Behav Brain Res       Date:  2001-11-01       Impact factor: 3.332

2.  DeepSqueak: a deep learning-based system for detection and analysis of ultrasonic vocalizations.

Authors:  Kevin R Coffey; Russell G Marx; John F Neumaier
Journal:  Neuropsychopharmacology       Date:  2019-01-04       Impact factor: 7.853

3.  Automating ultrasonic vocalization analyses: the WAAVES program.

Authors:  James M Reno; Bryan Marker; Lawrence K Cormack; Timothy Schallert; Christine L Duvauchelle
Journal:  J Neurosci Methods       Date:  2013-07-04       Impact factor: 2.390

4.  Behavioral abnormalities in the Fmr1-KO2 mouse model of fragile X syndrome: The relevance of early life phases.

Authors:  Julie Gaudissard; Melanie Ginger; Marika Premoli; Maurizio Memo; Andreas Frick; Susanna Pietropaolo
Journal:  Autism Res       Date:  2017-06-07       Impact factor: 5.216

5.  MUPET-Mouse Ultrasonic Profile ExTraction: A Signal Processing Tool for Rapid and Unsupervised Analysis of Ultrasonic Vocalizations.

Authors:  Maarten Van Segbroeck; Allison T Knoll; Pat Levitt; Shrikanth Narayanan
Journal:  Neuron       Date:  2017-05-03       Impact factor: 17.173

6.  Melanocortin 4 receptor stimulation improves social deficits in mice through oxytocin pathway.

Authors:  Andrea Mastinu; Marika Premoli; Giuseppina Maccarinelli; Mariagrazia Grilli; Maurizio Memo; Sara Anna Bonini
Journal:  Neuropharmacology       Date:  2018-02-15       Impact factor: 5.250

7.  Ultrasonic vocalizing by adult female mice (Mus musculus).

Authors:  J C Maggio; G Whitney
Journal:  J Comp Psychol       Date:  1985-12       Impact factor: 2.231

8.  Affiliative behavior, ultrasonic communication and social reward are influenced by genetic variation in adolescent mice.

Authors:  Jules B Panksepp; Kimberly A Jochman; Joseph U Kim; Jamie J Koy; Ellie D Wilson; Qiliang Chen; Clarinda R Wilson; Garet P Lahvis
Journal:  PLoS One       Date:  2007-04-04       Impact factor: 3.240

9.  Ultrasonic songs of male mice.

Authors:  Timothy E Holy; Zhongsheng Guo
Journal:  PLoS Biol       Date:  2005-11-01       Impact factor: 8.029

10.  Classifying sex and strain from mouse ultrasonic vocalizations using deep learning.

Authors:  A Ivanenko; P Watkins; M A J van Gerven; K Hammerschmidt; B Englitz
Journal:  PLoS Comput Biol       Date:  2020-06-22       Impact factor: 4.475

View more
  4 in total

1.  Capturing the songs of mice with an improved detection and classification method for ultrasonic vocalizations (BootSnap).

Authors:  Reyhaneh Abbasi; Peter Balazs; Maria Adelaide Marconi; Doris Nicolakis; Sarah M Zala; Dustin J Penn
Journal:  PLoS Comput Biol       Date:  2022-05-12       Impact factor: 4.779

2.  Nucleus Accumbens Chemogenetic Inhibition Suppresses Amphetamine-Induced Ultrasonic Vocalizations in Male and Female Rats.

Authors:  Kate A Lawson; Abigail Y Flores; Rachael E Hokenson; Christina M Ruiz; Stephen V Mahler
Journal:  Brain Sci       Date:  2021-09-22

3.  Computational bioacoustics with deep learning: a review and roadmap.

Authors:  Dan Stowell
Journal:  PeerJ       Date:  2022-03-21       Impact factor: 2.984

4.  Ultrasonic Vocalizations in Adult C57BL/6J Mice: The Role of Sex Differences and Repeated Testing.

Authors:  Marika Premoli; Valeria Petroni; Ronald Bulthuis; Sara Anna Bonini; Susanna Pietropaolo
Journal:  Front Behav Neurosci       Date:  2022-07-14       Impact factor: 3.617

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.