Literature DB >> 33462313

Radiolysis generates a complex organosynthetic chemical network.

Zachary R Adam1,2, Albert C Fahrenbach3, Sofia M Jacobson4, Betul Kacar5,4,6,7, Dmitry Yu Zubarev8.   

Abstract

The architectural features of cellular life and its ecologies at larger scales are built upon foundational networks of reactions between molecules that avoid a collapse to equilibrium. The search for life's origins is, in some respects, a search for biotic network attributes in abiotic chemical systems. Radiation chemistry has long been employed to model prebiotic reaction networks, and here we report network-level analyses carried out on a compiled database of radiolysis reactions, acquired by the scientific community over decades of research. The resulting network shows robust connections between abundant geochemical reservoirs and the production of carboxylic acids, amino acids, and ribonucleotide precursors-the chemistry of which is predominantly dependent on radicals. Moreover, the network exhibits the following measurable attributes associated with biological systems: (1) the species connectivity histogram exhibits a heterogeneous (heavy-tailed) distribution, (2) overlapping families of closed-loop cycles, and (3) a hierarchical arrangement of chemical species with a bottom-heavy energy-size spectrum. The latter attribute is implicated with stability and entropy production in complex systems, notably in ecology where it is known as a trophic pyramid. Radiolysis is implicated as a driver of abiotic chemical organization and could provide insights about the complex and perhaps radical-dependent mechanisms associated with life's origins.

Entities:  

Year:  2021        PMID: 33462313     DOI: 10.1038/s41598-021-81293-6

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  39 in total

1.  Topology of evolving networks: local events and universality

Authors: 
Journal:  Phys Rev Lett       Date:  2000-12-11       Impact factor: 9.161

2.  Organic compound synthesis on the primitive earth.

Authors:  S L MILLER; H C UREY
Journal:  Science       Date:  1959-07-31       Impact factor: 47.728

3.  Topological biosignatures: large-scale structure of chemical networks from biology and astrochemistry.

Authors:  Craig Jolley; Trevor Douglas
Journal:  Astrobiology       Date:  2011-12-28       Impact factor: 4.335

Review 4.  Prebiotic network evolution: six key parameters.

Authors:  Philippe Nghe; Wim Hordijk; Stuart A Kauffman; Sara I Walker; Francis J Schmidt; Harry Kemble; Jessica A M Yeates; Niles Lehman
Journal:  Mol Biosyst       Date:  2015-12

Review 5.  Scale-free networks in cell biology.

Authors:  Réka Albert
Journal:  J Cell Sci       Date:  2005-11-01       Impact factor: 5.285

6.  The radiation chemistry of aqueous solutions of hydrogen cyanide in the megarad dose range.

Authors:  Z D Draganić; I G Draganić; M Borovicanin
Journal:  Radiat Res       Date:  1976-04       Impact factor: 2.841

7.  Reduction of carbon dioxide in aqueous solutions by ionizing radiation.

Authors:  W M GARRISON; D C MORRISON; J G HAMILTON; A A BENSON; M CALVIN
Journal:  Science       Date:  1951-10-19       Impact factor: 47.728

8.  Expansion-modification systems: A model for spatial 1/f spectra.

Authors: 
Journal:  Phys Rev A       Date:  1991-05-15       Impact factor: 3.140

9.  Beyond the classical thermodynamic contributions to hydrogen atom abstraction reactivity.

Authors:  Daniel Bím; Mauricio Maldonado-Domínguez; Lubomír Rulíšek; Martin Srnec
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-25       Impact factor: 11.205

Review 10.  A study of free radical chemistry: their role and pathophysiological significance.

Authors:  Mariusz Gutowski; Sławomir Kowalczyk
Journal:  Acta Biochim Pol       Date:  2013-03-19       Impact factor: 2.149

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  3 in total

1.  Network Analysis Reveals Spatial Clustering and Annotation of Complex Chemical Spaces: Application to Astrochemistry.

Authors:  Alexander Ruf; Grégoire Danger
Journal:  Anal Chem       Date:  2022-10-09       Impact factor: 8.008

2.  The hierarchical organization of autocatalytic reaction networks and its relevance to the origin of life.

Authors:  Zhen Peng; Jeff Linderoth; David A Baum
Journal:  PLoS Comput Biol       Date:  2022-09-09       Impact factor: 4.779

Review 3.  The curious consistency of carbon biosignatures over billions of years of Earth-life coevolution.

Authors:  Amanda K Garcia; Colleen M Cavanaugh; Betul Kacar
Journal:  ISME J       Date:  2021-04-12       Impact factor: 11.217

  3 in total

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