Literature DB >> 26490759

Prebiotic network evolution: six key parameters.

Philippe Nghe1, Wim Hordijk2, Stuart A Kauffman3, Sara I Walker4, Francis J Schmidt5, Harry Kemble1, Jessica A M Yeates6, Niles Lehman6.   

Abstract

The origins of life likely required the cooperation among a set of molecular species interacting in a network. If so, then the earliest modes of evolutionary change would have been governed by the manners and mechanisms by which networks change their compositions over time. For molecular events, especially those in a pre-biological setting, these mechanisms have rarely been considered. We are only recently learning to apply the results of mathematical analyses of network dynamics to prebiotic events. Here, we attempt to forge connections between such analyses and the current state of knowledge in prebiotic chemistry. Of the many possible influences that could direct primordial network, six parameters emerge as the most influential when one considers the molecular characteristics of the best candidates for the emergence of biological information: polypeptides, RNA-like polymers, and lipids. These parameters are viable cores, connectivity kinetics, information control, scalability, resource availability, and compartmentalization. These parameters, both individually and jointly, guide the aggregate evolution of collectively autocatalytic sets. We are now in a position to translate these conclusions into a laboratory setting and test empirically the dynamics of prebiotic network evolution.

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Year:  2015        PMID: 26490759     DOI: 10.1039/c5mb00593k

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  30 in total

1.  Autocatalytic networks in biology: structural theory and algorithms.

Authors:  Mike Steel; Wim Hordijk; Joana C Xavier
Journal:  J R Soc Interface       Date:  2019-02-28       Impact factor: 4.118

2.  Spontaneous emergence of catalytic cycles with colloidal spheres.

Authors:  Zorana Zeravcic; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-10       Impact factor: 11.205

3.  Autocatalytic Sets and RNA Secondary Structure.

Authors:  Wim Hordijk
Journal:  J Mol Evol       Date:  2017-04-04       Impact factor: 2.395

Review 4.  Synthetic Biology: Engineering Living Systems from Biophysical Principles.

Authors:  Bryan A Bartley; Kyung Kim; J Kyle Medley; Herbert M Sauro
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

5.  The origin and early evolution of life in chemical composition space.

Authors:  David A Baum
Journal:  J Theor Biol       Date:  2018-08-12       Impact factor: 2.691

6.  How causal analysis can reveal autonomy in models of biological systems.

Authors:  William Marshall; Hyunju Kim; Sara I Walker; Giulio Tononi; Larissa Albantakis
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

7.  Dynamics of prebiotic RNA reproduction illuminated by chemical game theory.

Authors:  Jessica A M Yeates; Christian Hilbe; Martin Zwick; Martin A Nowak; Niles Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

8.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

Review 9.  Coenzyme world model of the origin of life.

Authors:  Alexei A Sharov
Journal:  Biosystems       Date:  2016-03-09       Impact factor: 1.973

10.  Autocatalytic, bistable, oscillatory networks of biologically relevant organic reactions.

Authors:  Sergey N Semenov; Lewis J Kraft; Alar Ainla; Mengxia Zhao; Mostafa Baghbanzadeh; Victoria E Campbell; Kyungtae Kang; Jerome M Fox; George M Whitesides
Journal:  Nature       Date:  2016-09-29       Impact factor: 49.962

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