Literature DB >> 16254242

Scale-free networks in cell biology.

Réka Albert1.   

Abstract

A cell's behavior is a consequence of the complex interactions between its numerous constituents, such as DNA, RNA, proteins and small molecules. Cells use signaling pathways and regulatory mechanisms to coordinate multiple processes, allowing them to respond to and adapt to an ever-changing environment. The large number of components, the degree of interconnectivity and the complex control of cellular networks are becoming evident in the integrated genomic and proteomic analyses that are emerging. It is increasingly recognized that the understanding of properties that arise from whole-cell function require integrated, theoretical descriptions of the relationships between different cellular components. Recent theoretical advances allow us to describe cellular network structure with graph concepts and have revealed organizational features shared with numerous non-biological networks. We now have the opportunity to describe quantitatively a network of hundreds or thousands of interacting components. Moreover, the observed topologies of cellular networks give us clues about their evolution and how their organization influences their function and dynamic responses.

Mesh:

Year:  2005        PMID: 16254242     DOI: 10.1242/jcs.02714

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  326 in total

1.  Systematic control of protein interactions for systems biology.

Authors:  Nitin Bhardwaj; Declan Clarke; Mark Gerstein
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  Dynamics and processing in finite self-similar networks.

Authors:  Simon DeDeo; David C Krakauer
Journal:  J R Soc Interface       Date:  2012-02-29       Impact factor: 4.118

3.  Topological analysis and interactive visualization of biological networks and protein structures.

Authors:  Nadezhda T Doncheva; Yassen Assenov; Francisco S Domingues; Mario Albrecht
Journal:  Nat Protoc       Date:  2012-03-15       Impact factor: 13.491

4.  Systems pharmacology of arrhythmias.

Authors:  Seth I Berger; Avi Ma'ayan; Ravi Iyengar
Journal:  Sci Signal       Date:  2010-04-20       Impact factor: 8.192

5.  Integrated systems view on networking by hormones in Arabidopsis immunity reveals multiple crosstalk for cytokinin.

Authors:  Muhammad Naseem; Nicole Philippi; Anwar Hussain; Gaby Wangorsch; Nazeer Ahmed; Thomas Dandekar
Journal:  Plant Cell       Date:  2012-05-29       Impact factor: 11.277

6.  Constant-complexity stochastic simulation algorithm with optimal binning.

Authors:  Kevin R Sanft; Hans G Othmer
Journal:  J Chem Phys       Date:  2015-08-21       Impact factor: 3.488

Review 7.  Methods for biological data integration: perspectives and challenges.

Authors:  Vladimir Gligorijević; Nataša Pržulj
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

Review 8.  Impact of host genetic polymorphisms on vaccine induced antibody response.

Authors:  Janina E Linnik; Adrian Egli
Journal:  Hum Vaccin Immunother       Date:  2016-01-25       Impact factor: 3.452

9.  Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.

Authors:  Pankaj Barah; Mahantesha Naika B N; Naresh Doni Jayavelu; Ramanathan Sowdhamini; Khader Shameer; Atle M Bones
Journal:  Nucleic Acids Res       Date:  2015-12-17       Impact factor: 16.971

Review 10.  Network inference and network response identification: moving genome-scale data to the next level of biological discovery.

Authors:  Diogo F T Veiga; Bhaskar Dutta; Gábor Balázsi
Journal:  Mol Biosyst       Date:  2009-12-11
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