Literature DB >> 33458217

The complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean.

Ela Patel1,2, Andrea M Bernard1, Marissa Mehlrose1, Sydney Harned1, Kimberly A Finnegan1, Cristín K Fitzpatrick3, James S Lea4,5, Mahmood S Shivji1.   

Abstract

We present the mitochondrial genome sequence of a gray reef shark, Carcharhinus amblyrhynchos (Bleeker 1856), a coral reef associated species. This is the first mitogenome for this species from the western Indian Ocean. The mitogenome is 16,705 bp in length, has 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and a non-coding control region, and demonstrates a gene arrangement congruent with other shark and most vertebrate species. This mitogenome provides a genomic resource for assisting with population, evolutionary and conservation studies for the gray reef shark, which is increasingly under threat from fisheries.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Carcharhinus amblyrhynchos; Gray reef shark; mitogenome

Year:  2020        PMID: 33458217      PMCID: PMC7782100          DOI: 10.1080/23802359.2020.1827064

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  9 in total

1.  Genetic structure and signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos).

Authors:  P Momigliano; R Harcourt; W D Robbins; V Jaiteh; G N Mahardika; A Sembiring; A Stow
Journal:  Heredity (Edinb)       Date:  2017-04-19       Impact factor: 3.821

2.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

3.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

4.  Connectivity in grey reef sharks (Carcharhinus amblyrhynchos) determined using empirical and simulated genetic data.

Authors:  Paolo Momigliano; Robert Harcourt; William D Robbins; Adam Stow
Journal:  Sci Rep       Date:  2015-08-28       Impact factor: 4.379

5.  MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

Authors:  Wataru Iwasaki; Tsukasa Fukunaga; Ryota Isagozawa; Koichiro Yamada; Yasunobu Maeda; Takashi P Satoh; Tetsuya Sado; Kohji Mabuchi; Hirohiko Takeshima; Masaki Miya; Mutsumi Nishida
Journal:  Mol Biol Evol       Date:  2013-08-16       Impact factor: 16.240

6.  Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae).

Authors:  Nicholas Dunn; Shaili Johri; David Curnick; Chris Carbone; Elizabeth A Dinsdale; Taylor K Chapple; Barbara A Block; Vincent Savolainen
Journal:  Mitochondrial DNA B Resour       Date:  2020-05-14       Impact factor: 0.658

7.  The real bounty: marine biodiversity in the Pitcairn Islands.

Authors:  Alan M Friedlander; Jennifer E Caselle; Enric Ballesteros; Eric K Brown; Alan Turchik; Enric Sala
Journal:  PLoS One       Date:  2014-06-25       Impact factor: 3.240

8.  Protection from illegal fishing and shark recovery restructures mesopredatory fish communities on a coral reef.

Authors:  Conrad W Speed; Matthew J Rees; Katherine Cure; Brigit Vaughan; Mark G Meekan
Journal:  Ecol Evol       Date:  2019-08-20       Impact factor: 2.912

9.  Contrasting global, regional and local patterns of genetic structure in gray reef shark populations from the Indo-Pacific region.

Authors:  E Boissin; S R Thorrold; C D Braun; Y Zhou; E E Clua; S Planes
Journal:  Sci Rep       Date:  2019-11-01       Impact factor: 4.379

  9 in total

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